View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_4 (Length: 695)

Name: NF11751_low_4
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11751_low_4
NF11751_low_4
[»] chr2 (19 HSPs)
chr2 (12-672)||(44752205-44752863)
chr2 (539-673)||(18105372-18105508)
chr2 (537-672)||(17981491-17981627)
chr2 (537-672)||(5394390-5394526)
chr2 (552-645)||(7157506-7157601)
chr2 (553-672)||(42745127-42745248)
chr2 (537-655)||(12133258-12133378)
chr2 (537-669)||(9438150-9438284)
chr2 (596-676)||(7020367-7020446)
chr2 (537-657)||(993747-993868)
chr2 (537-621)||(3772605-3772691)
chr2 (598-672)||(24412938-24413011)
chr2 (539-620)||(38463950-38464033)
chr2 (553-634)||(44732622-44732705)
chr2 (537-587)||(19252590-19252640)
chr2 (556-623)||(37568787-37568856)
chr2 (598-671)||(14121894-14121967)
chr2 (553-623)||(17627568-17627640)
chr2 (537-622)||(34483455-34483541)
[»] chr4 (20 HSPs)
chr4 (554-672)||(14854615-14854735)
chr4 (553-672)||(31307077-31307198)
chr4 (537-672)||(45994515-45994652)
chr4 (537-672)||(38766082-38766219)
chr4 (537-672)||(35334109-35334246)
chr4 (539-672)||(17135092-17135226)
chr4 (610-672)||(33529325-33529387)
chr4 (539-628)||(38844223-38844314)
chr4 (553-672)||(46016155-46016279)
chr4 (556-644)||(56447161-56447251)
chr4 (596-672)||(9012324-9012400)
chr4 (555-672)||(35972354-35972473)
chr4 (596-672)||(47023456-47023532)
chr4 (612-671)||(9455565-9455624)
chr4 (538-677)||(3649052-3649193)
chr4 (537-570)||(28408480-28408513)
chr4 (555-672)||(46250566-46250688)
chr4 (596-636)||(4710005-4710045)
chr4 (537-622)||(25712477-25712564)
chr4 (598-638)||(39262261-39262301)
[»] chr6 (7 HSPs)
chr6 (537-672)||(21910198-21910334)
chr6 (537-671)||(25084027-25084163)
chr6 (537-672)||(12411141-12411278)
chr6 (580-672)||(12836908-12837002)
chr6 (539-671)||(15614585-15614719)
chr6 (537-632)||(17457117-17457214)
chr6 (602-671)||(6062102-6062171)
[»] chr8 (14 HSPs)
chr8 (537-672)||(19715736-19715874)
chr8 (553-672)||(4125035-4125156)
chr8 (553-672)||(2743942-2744063)
chr8 (537-672)||(12958096-12958233)
chr8 (537-672)||(30056012-30056149)
chr8 (553-672)||(30936013-30936134)
chr8 (552-672)||(15682937-15683059)
chr8 (553-672)||(13468756-13468877)
chr8 (553-672)||(36994511-36994632)
chr8 (596-672)||(7839264-7839340)
chr8 (598-660)||(8034152-8034214)
chr8 (596-628)||(8878150-8878182)
chr8 (597-634)||(44639038-44639075)
chr8 (602-634)||(10031018-10031050)
[»] chr3 (12 HSPs)
chr3 (537-669)||(48204325-48204459)
chr3 (537-672)||(25224692-25224829)
chr3 (553-672)||(30995976-30996097)
chr3 (596-672)||(20861302-20861378)
chr3 (537-647)||(38088628-38088740)
chr3 (560-672)||(27763737-27763851)
chr3 (537-672)||(22288228-22288365)
chr3 (537-672)||(40294605-40294742)
chr3 (599-671)||(55123154-55123226)
chr3 (597-672)||(38331183-38331258)
chr3 (553-623)||(22755653-22755725)
chr3 (597-662)||(48210981-48211046)
[»] chr7 (16 HSPs)
chr7 (537-672)||(8839292-8839429)
chr7 (553-672)||(29059814-29059935)
chr7 (553-672)||(31492112-31492233)
chr7 (553-671)||(46373682-46373802)
chr7 (553-672)||(19477261-19477381)
chr7 (553-667)||(13254117-13254233)
chr7 (596-672)||(20207551-20207627)
chr7 (598-672)||(35707902-35707976)
chr7 (553-671)||(21747052-21747171)
chr7 (580-646)||(28537426-28537494)
chr7 (580-642)||(40211989-40212053)
chr7 (537-646)||(27484086-27484197)
chr7 (539-671)||(7265325-7265459)
chr7 (609-672)||(11486755-11486818)
chr7 (537-626)||(12142619-12142710)
chr7 (575-672)||(23933662-23933761)
[»] chr1 (7 HSPs)
chr1 (537-672)||(22022113-22022250)
chr1 (553-672)||(12035558-12035680)
chr1 (537-672)||(28724666-28724802)
chr1 (608-672)||(36806677-36806741)
chr1 (576-628)||(7242862-7242916)
chr1 (581-669)||(9781003-9781093)
chr1 (561-619)||(52912638-52912696)
[»] scaffold0182 (1 HSPs)
scaffold0182 (553-672)||(26340-26461)
[»] chr5 (9 HSPs)
chr5 (553-672)||(10591936-10592057)
chr5 (596-672)||(5123509-5123585)
chr5 (577-672)||(31113367-31113464)
chr5 (539-620)||(12682630-12682713)
chr5 (537-623)||(30785046-30785134)
chr5 (556-672)||(2798326-2798444)
chr5 (606-672)||(32313117-32313183)
chr5 (537-634)||(3525903-3526001)
chr5 (558-671)||(18909313-18909428)
[»] scaffold0189 (1 HSPs)
scaffold0189 (575-660)||(10983-11070)


Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 12 - 672
Target Start/End: Complemental strand, 44752863 - 44752205
Alignment:
Q  12 agagactagtggaagtaccatacacagcttcacttggacaaacaatgaacacacttgtaacaaacaaggtagtggcggttccagtggctgcaccgccagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  44752863 agagactagtggaagtaccatacacagcttcacttggacaaacaatgaacacacttgtagcaaacaaggtagtggcggttccggtggctgcaccgccagg 44752764  T
Q  112 tcagtggattggagcaggagggtctatgattgtggagtctgataaacaaacaggagctgtaaggaagcattacatagggatggttactatgcttgatatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44752763 tcagtggattggagcaggagggtctatgattgtggagtctgataaacaaacaggagctgtaaggaagcattacatagggatggttactatgcttgatatt 44752664  T
Q  212 gttgctcatatagctggtgatgatcatttgagtggtggtgatgatgttgaagaagatcttgatcaaaggatgtctgttcctgtttcttctatcattggtc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44752663 gttgctcatatagctggtgatgatcatttgagtggtggtgatgatgttgaagaagatcttgatcaaaggatgtctgttcctgtttcttctatcattggtc 44752564  T
Q  312 actcctttgaaggccttagcttgtggactcttaatccaaataccaggttcttagaaatctatatatgcaattacatcacaactgtatttttcatcacatg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44752563 actcctttgaaggccttagcttgtggactcttaatccaaataccaggttcttagaaatctatatatgcaattgcatcacaactgtatttttcatcacatg 44752464  T
Q  412 agtagt-attttttatgtgaatatgtaataatttataattggtttatacatactaccgaaggtggtatatataaaaatcatgtagcacatagaagactat 510  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44752463 agtagtaactttttatgtgaatatgtaataatttataattggtttatacatactaccgaaggtagtatatataaaaatcatgtagcacatagaagactat 44752364  T
Q  511 atagagtacccaagcccgcttagatgagatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaac 608  Q
    ||| ||||||||||  |||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  44752363 atatagtacccaagtgcgctt-----agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatcaagtcttgggcatgcaacaac 44752269  T
Q  609 gttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44752268 gttaaaactctttgggagagcttgccaccaatttgggttctacaatactcgagggattagtctc 44752205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 539 - 673
Target Start/End: Complemental strand, 18105508 - 18105372
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccac 636  Q
    ||||||||  || |||||||||||||||||||||  |||| ||||||||||||| ||  |||||||||||||||||||| ||||| | ||||| |||| |    
T  18105508 atgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcaacaacgttaaaattcttatggagagcctgccgc 18105409  T
Q  637 caatttgggttctacaatactcgagggattagtctcg 673  Q
    | ||||| ||   ||||||||||||||||||||||||    
T  18105408 ccatttgagtctcacaatactcgagggattagtctcg 18105372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 17981491 - 17981627
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || |||||||||||||||||||||| ||||   ||  ||||||||||  ||||||||||||| |||||||||||||| ||||||||||    
T  17981491 agatgagatggaacgagtctcttctagcttaaccaaagtcctgaatttaaatccagtcttgggcatgcaacaacattaaaactcttagggagagcttgcc 17981590  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
      |||||||||| | ||||| |||||| ||||||||||    
T  17981591 -gcaatttgggtcccacaatgctcgagagattagtctc 17981627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 5394390 - 5394526
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || |||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| | | ||||||||||||||| ||||| ||||    
T  5394390 agatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagc-atgttaaaactcttagggagagcctgcc 5394488  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || |||||||| | ||||| |||| ||||||||||||    
T  5394489 gcccatttgggtcccacaatgctcgtgggattagtctc 5394526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 552 - 645
Target Start/End: Original strand, 7157506 - 7157601
Alignment:
Q  552 agtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttggg 645  Q
    ||||||||||| |||||||||  ||||||||||||||| || ||  |||||||| ||||||||||||||||||| ||||| |||| || |||||||    
T  7157506 agtctcttctaacttaaccaagatcctaggttcgaatctagccttgggcatgcagcaacgttaaaactcttagggagagcctgccgcctatttggg 7157601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 42745248 - 42745127
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||| ||||||||||||  || | ||||||||||||| ||  |||||||| ||| ||||||||||||||| ||||  |||  || |||||||||| |    
T  42745248 gtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaatgttaaaactcttagggagagtctgctgcctatttgggttcca 42745149  T
Q  651 caatactcgagggattagtctc 672  Q
    ||||  ||||||||||||||||    
T  42745148 caatggtcgagggattagtctc 42745127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 655
Target Start/End: Complemental strand, 12133378 - 12133258
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || ||||||||||||||||| |||  || | ||||||||||||| || |  |||||| ||||||||||||||||||| ||||| ||||    
T  12133378 agatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgcagcaacgttaaaactcttagggagagcctgcc 12133279  T
Q  635 accaatttgggttctacaata 655  Q
      | |||||||| ||||||||    
T  12133278 gtccatttgggtcctacaata 12133258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 669
Target Start/End: Complemental strand, 9438284 - 9438150
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || | |||||| ||||||||||||| || | ||||||||||||| ||  |||||||| ||  ||||||||||||||||||| | ||||    
T  9438284 agatgagatggaacgaatctcttttagcttaaccaaagtctttggttcgaatccagccttgggcatgcagcagggttaaaactcttaggaagaacctgcc 9438185  T
Q  635 accaatttgggttctacaatactcgagggattagt 669  Q
     || ||||| || | ||||| || |||||||||||    
T  9438184 gcccatttgtgtcccacaatgcttgagggattagt 9438150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 676
Target Start/End: Complemental strand, 7020446 - 7020367
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctcgaca 676  Q
    |||||||| ||| ||||||| ||||||| ||| |||||| || |||||||| ||||||| |||||| ||||||||||||||    
T  7020446 ggcatgcagcaatgttaaaa-tcttagggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgaca 7020367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 537 - 657
Target Start/End: Original strand, 993747 - 993868
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||  ||||||| ||||||||||||  |||| ||||||||| ||  ||  |||||||| || ||| |||||||||||| ||| ||||||    
T  993747 agatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagcgt-aaaactcttagggagaacttgcc 993845  T
Q  635 accaatttgggttctacaatact 657  Q
     || |||||||| ||||||||||    
T  993846 gcccatttgggtcctacaatact 993868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 537 - 621
Target Start/End: Complemental strand, 3772691 - 3772605
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactctta 621  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||| ||||||||||| ||| |  |||||||||| |||||| ||||||    
T  3772691 agatgagatgacacaagtctcttctaatttaaccaaggtcctaagttcgaatccaatcttgaacatgcaacaatgttaaacctctta 3772605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 672
Target Start/End: Complemental strand, 24413011 - 24412938
Alignment:
Q  598 catgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||| ||||||||||||||| |||| |||||||||||| ||||| || | |||||||| |||| |||||||||    
T  24413011 catgcagcaacgttaaaactctaagga-gagcttgccacctatttgagtcccacaatacttgaggaattagtctc 24412938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 620
Target Start/End: Original strand, 38463950 - 38464033
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactctt 620  Q
    |||||| || || ||||| ||||| |||||||||| | |||| ||||||||||| ||  ||||||||||| |||||||||||||    
T  38463950 atgagacgacacgagtcttttctaacttaaccaaagttctagattcgaatccagccttgggcatgcaacaccgttaaaactctt 38464033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 634
Target Start/End: Complemental strand, 44732705 - 44732622
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||| ||||||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| ||||    
T  44732705 gtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgcc 44732622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 587
Target Start/End: Complemental strand, 19252640 - 19252590
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaa 587  Q
    ||||||||||||||  ||||||| ||||||||||||||||||  |||||||    
T  19252640 agatgagatgatacgggtctcttttagcttaaccaaactcctgagttcgaa 19252590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 623
Target Start/End: Complemental strand, 37568856 - 37568787
Alignment:
Q  556 tcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttagg 623  Q
    |||||||||||||||||  |||| ||||||||||||| ||  |||||||| ||  |||||||||||||||    
T  37568856 tcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgcagcagtgttaaaactcttagg 37568787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 14121967 - 14121894
Alignment:
Q  598 catgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtct 671  Q
    |||||| ||||||||||| ||||||  ||| |||||| || ||||| || | ||||| ||||||||||||||||    
T  14121967 catgcagcaacgttaaaattcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 623
Target Start/End: Original strand, 17627568 - 17627640
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttagg 623  Q
    ||||||||||  ||||||||  ||||  |||||||||||| ||  |||||||||||||||||||| |||||||    
T  17627568 gtctcttctaatttaaccaaggtcctgagttcgaatccagccttgggcatgcaacaacgttaaaattcttagg 17627640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 622
Target Start/End: Original strand, 34483455 - 34483541
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttag 622  Q
    |||| |||||| ||| |||| |||||||||||||||| | || ||||| ||| ||||||  | ||||||||| |||||||||||||||    
T  34483455 agataagatgacacatgtcttttctagcttaaccaaagttct-ggttcaaattcagtcttggacatgcaacagcgttaaaactcttag 34483541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 554 - 672
Target Start/End: Original strand, 14854615 - 14854735
Alignment:
Q  554 tctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctac 651  Q
    |||||||||||||||||||  | || ||||||||||||| ||  |||||||| || |||||||||||||||| |||||||||| || |||||||| | ||    
T  14854615 tctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagcttgccgcccatttgggtccaac 14854714  T
Q  652 aatactcgagggattagtctc 672  Q
    ||| |||||||||||||||||    
T  14854715 aattctcgagggattagtctc 14854735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 31307198 - 31307077
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| |||| || |||||||| | |    
T  31307198 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtccca 31307099  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| |||||||||||||||||    
T  31307098 caatgctcgagggattagtctc 31307077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 45994515 - 45994652
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  ||| ||||||||||||||||||||  |||| | ||||||||||| ||  |||||||||||||||||||||||||||| ||||| || |    
T  45994515 agatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgac 45994614  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || ||||||||   ||||| |||||| ||||||||||    
T  45994615 gcccatttgggtctcacaatgctcgagagattagtctc 45994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 38766082 - 38766219
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || |||||||||||||||||||||  |||| |||| |||||||| ||  |||||||| || |||||||||||||||| ||||  ||||    
T  38766082 agatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtctgcc 38766181  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || ||||||||   ||||| |||||||||||||||||    
T  38766182 gcccatttgggtctcacaatgctcgagggattagtctc 38766219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 672
Target Start/End: Complemental strand, 35334246 - 35334109
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  ||||||||||||||||||||||||  | || |||||| || ||| ||  |||||||| ||  ||||||||||||||  ||||   |||    
T  35334246 agatgagatggaacaagtctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgcagcagagttaaaactcttagagagagtccgcc 35334147  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || |||||||| | |||||||||||||||||||||||    
T  35334146 gcccatttgggtcccacaatactcgagggattagtctc 35334109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 539 - 672
Target Start/End: Original strand, 17135092 - 17135226
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccac 636  Q
    ||||||||| ||  |||||||||||||||| |||| ||||| |||||||||||| ||   ||||||| || |||||||||||||||| |||| ||||| |    
T  17135092 atgagatgacacgtgtctcttctagcttaatcaaagtccta-gttcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgc 17135190  T
Q  637 caatttgggttctacaatactcgagggattagtctc 672  Q
      ||||| || | | || ||||||||||||||||||    
T  17135191 gcatttgagtcccagaagactcgagggattagtctc 17135226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 672
Target Start/End: Original strand, 33529325 - 33529387
Alignment:
Q  610 ttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||||| |||||||||| || |||||||| | |||||||| ||||||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctc 33529387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 628
Target Start/End: Complemental strand, 38844314 - 38844223
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagag 628  Q
    ||||||||  || |||||||||||||||||||||  || |  ||||||||||||  |  ||||||||||| |||||||||||||||||||||    
T  38844314 atgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatccagctttgggcatgcaacagcgttaaaactcttaggaagag 38844223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 46016155 - 46016279
Alignment:
Q  553 gtctcttctagcttaaccaaac---tcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggtt 647  Q
    ||||||||||||||||||||     |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| |||| || ||||||||     
T  46016155 gtctcttctagcttaaccaagtaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtc 46016254  T
Q  648 ctacaatactcgagggattagtctc 672  Q
    | ||||| ||||| | |||||||||    
T  46016255 ccacaatgctcgaagaattagtctc 46016279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 644
Target Start/End: Complemental strand, 56447251 - 56447161
Alignment:
Q  556 tcttctagcttaaccaaactcctaggttcgaatccag-tct-ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgg 644  Q
    |||||||| ||||||||| |||||||||||||||||| | | |||||||| ||  ||||||||||||||| |||| |||| ||| ||||||    
T  56447251 tcttctagtttaaccaaagtcctaggttcgaatccagctatgggcatgcagcagtgttaaaactcttagggagagtttgctacccatttgg 56447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 672
Target Start/End: Original strand, 9012324 - 9012400
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||| ||  ||| ||||||||||| |||||||||| || | |||||| | ||||| |||||||||||||||||    
T  9012324 ggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctc 9012400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 672
Target Start/End: Original strand, 35972354 - 35972473
Alignment:
Q  555 ctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctaca 652  Q
    ||||||||||||||||||  || | ||||||||||||| |   ||||| || || |||||||||| ||||| |||| ||||| || |||||||| | ||     
T  35972354 ctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcatacagcagcgttaaaactattagggagagtttgccgcccatttgggtcccact 35972453  T
Q  653 atactcgagggattagtctc 672  Q
    ||  ||||||||||||||||    
T  35972454 atgttcgagggattagtctc 35972473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 672
Target Start/End: Original strand, 47023456 - 47023532
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||| ||||||||||||||| |||| ||| |  | |||||||| | |||| |||||| |||||||||||    
T  47023456 ggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 671
Target Start/End: Complemental strand, 9455624 - 9455565
Alignment:
Q  612 aaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtct 671  Q
    |||||||||||||||||||||||||  ||||| || | ||||| |||||| |||||||||    
T  9455624 aaaactcttaggaagagcttgccactcatttgagtcccacaatgctcgagagattagtct 9455565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 677
Target Start/End: Complemental strand, 3649193 - 3649052
Alignment:
Q  538 gatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcca 635  Q
    |||||||||| || |||||||| ||| ||||||||| |  | | ||  |||| |||||  |||||||||||||||||||||||||||| |||| || ||     
T  3649193 gatgagatgacacgagtctcttttagtttaaccaaaattttggatttaaatctagtcttgggcatgcaacaacgttaaaactcttagggagagttttccg 3649094  T
Q  636 ccaatttgggttctacaatactcgagggattagtctcgacaa 677  Q
    |  |||||| |   |||| |||||| ||||||||||| ||||    
T  3649093 ctcatttggatcgcacaagactcgaaggattagtctctacaa 3649052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 570
Target Start/End: Original strand, 28408480 - 28408513
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaacc 570  Q
    ||||||||||||| ||||||||||||||||||||    
T  28408480 agatgagatgatataagtctcttctagcttaacc 28408513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 672
Target Start/End: Complemental strand, 46250688 - 46250566
Alignment:
Q  555 ctcttctagcttaaccaaac---tcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttct 649  Q
    ||||||||||||||||||     |||||||||||||||||||||  |||||||| ||  ||||||||||||| | | ||| |||| || |||||||| |     
T  46250688 ctcttctagcttaaccaagtaggtcctaggttcgaatccagtcttgggcatgcagcagtgttaaaactcttatggaaagcctgccgcccatttgggtccc 46250589  T
Q  650 acaatactcgagggattagtctc 672  Q
    || || ||||| | |||||||||    
T  46250588 acgatgctcgaagaattagtctc 46250566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 596 - 636
Target Start/End: Complemental strand, 4710045 - 4710005
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccac 636  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  4710045 ggcatgcaacaacgttaaaactcttagagagagtttgccac 4710005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 25712564 - 25712477
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttag 622  Q
    ||||||||||||||||||||| |||||||||| |||  || |   ||||||||||||||  |  |||| ||||| |||||||||||||    
T  25712564 agatgagatgatacaagtctcctctagcttaaacaaggtcatgaattcgaatccagtcttggaaatgccacaaccttaaaactcttag 25712477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 638
Target Start/End: Complemental strand, 39262301 - 39262261
Alignment:
Q  598 catgcaacaacgttaaaactcttaggaagagcttgccacca 638  Q
    |||||||||||||||||| |||||||||||| ||| |||||    
T  39262301 catgcaacaacgttaaaagtcttaggaagagtttgtcacca 39262261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 21910198 - 21910334
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||| ||  ||||||||||| |||||||||||||||  ||||  ||||    
T  21910198 agatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgcc 21910297  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     |  |||| ||| | ||||||||| |||||||||||||    
T  21910298 gctcatttaggtcccacaatactc-agggattagtctc 21910334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 537 - 671
Target Start/End: Original strand, 25084027 - 25084163
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| |||||||||||||||||||| |||| || |  |||||||| ||||||  | |||||| ||| ||||||||||||||| |||||||| |    
T  25084027 agatgagatgacacaagtctcttctagcttaatcaaagtcttgagttcgaattcagtcttggacatgcagcaatgttaaaactcttagggagagcttgtc 25084126  T
Q  635 accaatttgggttctacaatactcgagggattagtct 671  Q
    | | ||||  |||| ||||| |||||| |||||||||    
T  25084127 atccatttaagttccacaatgctcgagagattagtct 25084163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 12411141 - 12411278
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  ||| |||||||||| |||||||||  ||||  |||||||||||| ||  |||||||| || |||||||||||||||||||||  ||||    
T  12411141 agatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgcc 12411240  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || ||||  || | ||||| || ||||||||||||||    
T  12411241 gcccatttaagtcccacaatgcttgagggattagtctc 12411278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 580 - 672
Target Start/End: Complemental strand, 12837002 - 12836908
Alignment:
Q  580 ggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    ||||||||||||| ||  |||||||| || |||||||||||||||| |||||| ||| || |||||||| | ||||| || ||||||||||||||    
T  12837002 ggttcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctc 12836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 671
Target Start/End: Complemental strand, 15614719 - 15614585
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagagcttgccac 636  Q
    ||||||||  || ||||||||||| |||||||||  || | ||||||||| |||||| |  |||| | ||||||||||||| || |||||| ||| ||||    
T  15614719 atgagatggaacgagtctcttctaacttaaccaatgtcatgggttcgaattcagtcttggacatgtagcaacgttaaaacttttcggaagaacttaccac 15614620  T
Q  637 caatttgggttctacaatactcgagggattagtct 671  Q
    | ||||| || | ||||| ||| ||| ||||||||    
T  15614619 ctatttgagtcccacaatgctctaggaattagtct 15614585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 632
Target Start/End: Complemental strand, 17457214 - 17457117
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttg 632  Q
    ||||||||||| |||  |||||| || |||||||||| |  |  ||| |||| ||||||  |||||||| ||||||||||||| ||||||||||||||    
T  17457214 agatgagatgacacagatctcttttaacttaaccaaagttatgagtttgaattcagtcttcggcatgcatcaacgttaaaacttttaggaagagcttg 17457117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 671
Target Start/End: Original strand, 6062102 - 6062171
Alignment:
Q  602 caacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtct 671  Q
    ||||||| |||||||||||||||||||||||||    |||||||| ||||||   |||| ||||||||||    
T  6062102 caacaacattaaaactcttaggaagagcttgccgttcatttgggtcctacaacgttcgatggattagtct 6062171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 537 - 672
Target Start/End: Complemental strand, 19715874 - 19715736
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  ||| |||| |||||||||||||||  |||| ||||||||||||| ||  |||||||| || |||||||||||| ||| ||||||||||    
T  19715874 agatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggagagcttgcc 19715775  T
Q  635 accaatttgggttctacaatactcga-gggattagtctc 672  Q
     || |||||||| | ||||| ||||| ||||||||||||    
T  19715774 gcccatttgggtcccacaatgctcgaggggattagtctc 19715736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 4125156 - 4125035
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| |||||||||| || ||  |||||||| ||  ||||||||||||||| ||||| |||| || |||||||| | |    
T  4125156 gtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagcactgttaaaactcttagggagagcctgccgcccatttgggtccca 4125057  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| |||||||||||||||||    
T  4125056 caatgctcgagggattagtctc 4125035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 2743942 - 2744063
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| || |  | |||||||| | |    
T  2743942 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcatgtcgtccatttgggtccca 2744041  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| |||||||||||||||||    
T  2744042 caatgctcgagggattagtctc 2744063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 537 - 672
Target Start/End: Complemental strand, 12958233 - 12958096
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || |||||||||||||||||||||  || | |||| ||||||||  |  |||||||| || |||||||||||||||| ||||| || |    
T  12958233 agatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctgtc 12958134  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || |||||||| | ||||| |||||||||||||||||    
T  12958133 gcccatttgggtcccacaatgctcgagggattagtctc 12958096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 537 - 672
Target Start/End: Complemental strand, 30056149 - 30056012
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  ||| ||||||||||||||||| ||  || | ||||| ||||||| ||  |||||||| || | |||||||||||||| ||||| ||||    
T  30056149 agatgagatggaacatgtctcttctagcttaacgaaggtcatgggttcaaatccagccttaggcatgcagcagcattaaaactcttagggagagcctgcc 30056050  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
      | |||||||||| ||||| |||||||||||||||||    
T  30056049 gtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 30936013 - 30936134
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtctg--gcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    |||||||||| |||||||||  ||||  |||||||||||| ||   ||||||| ||||||||||||||||||| ||||| |||| || |||||||| | |    
T  30936013 gtctcttctaacttaaccaaggtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagggagagcctgccgcccatttgggtccga 30936112  T
Q  651 caatactcgagggattagtctc 672  Q
    ||||  ||||||||||||||||    
T  30936113 caatgttcgagggattagtctc 30936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 672
Target Start/End: Original strand, 15682937 - 15683059
Alignment:
Q  552 agtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttct 649  Q
    ||||||||||||||||| |||  ||||  |||||||||||| ||  |||||||| || |||||||||||||||| ||||| |||| || |||| ||| |     
T  15682937 agtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtccc 15683036  T
Q  650 acaatactcgagggattagtctc 672  Q
    ||||| |||||||||||| ||||    
T  15683037 acaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 13468877 - 13468756
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||  |||||| | || |||||||||||||||  ||||  |||| || ||||| || | |    
T  13468877 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctgccgcccatttgagtccca 13468778  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| ||||| |||||||||||    
T  13468777 caatgctcgaaggattagtctc 13468756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 36994632 - 36994511
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||| ||||||||  |||| ||||||||||||| || |  |||||| || |||||||||||||| | |||| ||||  || |||||||| | |    
T  36994632 gtctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtccca 36994533  T
Q  651 caatactcgagggattagtctc 672  Q
    |||  |||||||||||||||||    
T  36994532 caaggctcgagggattagtctc 36994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 672
Target Start/End: Complemental strand, 7839340 - 7839264
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||| || | |||||||||||||| ||||| |||| || |||||||| | ||||| |||||||||||||||||    
T  7839340 ggcatgcagcagctttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctc 7839264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 660
Target Start/End: Complemental strand, 8034214 - 8034152
Alignment:
Q  598 catgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcga 660  Q
    |||||||||||||||||||||||||| |||||||||   | |||||||| | |||||||||||    
T  8034214 catgcaacaacgttaaaactcttagggagagcttgcagtccatttgggtcccacaatactcga 8034152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 628
Target Start/End: Complemental strand, 8878182 - 8878150
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagag 628  Q
    |||||||||||||||||||||||||||||||||    
T  8878182 ggcatgcaacaacgttaaaactcttaggaagag 8878150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 634
Target Start/End: Original strand, 44639038 - 44639075
Alignment:
Q  597 gcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  44639038 gcatgcaacaacgttaaaactcttagggagagtttgcc 44639075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 634
Target Start/End: Original strand, 10031018 - 10031050
Alignment:
Q  602 caacaacgttaaaactcttaggaagagcttgcc 634  Q
    |||||||||||||||||||||| ||||||||||    
T  10031018 caacaacgttaaaactcttagggagagcttgcc 10031050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 537 - 669
Target Start/End: Complemental strand, 48204459 - 48204325
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || |||||||||||||||||||||  || | ||||||||||||| ||  |||||||| |||||||||||| |||||| |||||||| |    
T  48204459 agatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagcttgtc 48204360  T
Q  635 accaatttgggttctacaatactcgagggattagt 669  Q
      | |||||||||| ||||| ||| ||||||||||    
T  48204359 gtccatttgggttccacaatgctcaagggattagt 48204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 25224692 - 25224829
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||  ||||||||||||||||||||  |||| |||||||||| ||| |  || ||||| || |||||||||||||| | ||| ||||||    
T  25224692 agatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagcgttaaaactcttaaggagaacttgcc 25224791  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || |||| ||| | ||||| ||| |||||||||||||    
T  25224792 gcccatttaggtcccacaatgctcaagggattagtctc 25224829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 30996097 - 30995976
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    |||||||||| |||||||||  |||| |||||||||||   ||  ||||||||||| |||||||||||||||| ||||  |||| || || ||||| | |    
T  30996097 gtctcttctatcttaaccaaggtcctgggttcgaatccgaccttgggcatgcaacagcgttaaaactcttagggagagtctgccgcccatctgggtccca 30995998  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| |||||||||||||||||    
T  30995997 caatgctcgagggattagtctc 30995976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 596 - 672
Target Start/End: Original strand, 20861302 - 20861378
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||| || |||||||||||||||| ||||| |||| || |||||||||| | ||| |||||||||||||||||    
T  20861302 ggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctc 20861378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 647
Target Start/End: Original strand, 38088628 - 38088740
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccag--tctggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||  ||||||||||||||||||||  | | ||||||||||||||  |  ||||||||  | |||||||||||||||| ||| ||||||    
T  38088628 agatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagctttgggcatgcagtagcgttaaaactcttagggagaacttgcc 38088727  T
Q  635 accaatttgggtt 647  Q
     || |||||||||    
T  38088728 gcctatttgggtt 38088740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 560 - 672
Target Start/End: Original strand, 27763737 - 27763851
Alignment:
Q  560 ctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatact 657  Q
    |||||||||||||  |||| ||||||||||||| ||  ||||| |||||  ||||||||||||||| ||||  ||||  | ||||| || | ||||| ||    
T  27763737 ctagcttaaccaaggtcctgggttcgaatccagccttgggcatacaacagtgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgct 27763836  T
Q  658 cgagggattagtctc 672  Q
    |||||||||||||||    
T  27763837 cgagggattagtctc 27763851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 22288228 - 22288365
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| |  | ||||||||| |||||||||| ||||  |||||||| ||| || |  |||||||||| ||||||||||||||| ||| |||| |    
T  22288228 agatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttagggagaacttgtc 22288327  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
      | ||||| |||  ||||||||| ||| |||||||||    
T  22288328 gtccatttgagttacacaatactcaaggaattagtctc 22288365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 40294605 - 40294742
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctggcat--gcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| || |||||| |||| ||||| |||  ||||  |||||||||||| || | ||  ||||||| ||||||||||||||| | ||||||||    
T  40294605 agatgagatgacacgagtctcctctaccttaatcaaggtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttgcc 40294704  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     |  |||||  | | ||||||||||| |||||||||||    
T  40294705 gctcatttgaatcccacaatactcgaaggattagtctc 40294742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 671
Target Start/End: Original strand, 55123154 - 55123226
Alignment:
Q  599 atgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtct 671  Q
    ||||| || |||||||| ||||||| ||||||||| ||| ||||||||   ||||| ||||||||||||||||    
T  55123154 atgcagcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtct 55123226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 672
Target Start/End: Original strand, 38331183 - 38331258
Alignment:
Q  597 gcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    ||||||| || |||||||||||||||  |||||||||| || |||||||| | |||||  | ||||||||||||||    
T  38331183 gcatgcagcagcgttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctc 38331258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 623
Target Start/End: Original strand, 22755653 - 22755725
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttagg 623  Q
    |||| |||||| ||||||||| | |||||||||||||||| ||  |||||||| || | ||||||||||||||    
T  22755653 gtctattctaggttaaccaaagtactaggttcgaatccagccttgggcatgcagcagcattaaaactcttagg 22755725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 662
Target Start/End: Complemental strand, 48211046 - 48210981
Alignment:
Q  597 gcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagg 662  Q
    ||||||| ||||||||||||||||| | ||||||||||  | |||| ||| | |||||||||||||    
T  48211046 gcatgcagcaacgttaaaactcttatggagagcttgccgtctatttaggtcccacaatactcgagg 48210981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 537 - 672
Target Start/End: Complemental strand, 8839429 - 8839292
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||  ||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| || |||||||||||||||| |||   ||||    
T  8839429 agatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatctgcc 8839330  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
     || |||| | | | |||||||||||||||||||||||    
T  8839329 gcctatttagatcccacaatactcgagggattagtctc 8839292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 29059814 - 29059935
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| |||| || |||||||| | |    
T  29059814 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtccca 29059913  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| || ||||||||||||||    
T  29059914 caatgcttgagggattagtctc 29059935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 31492112 - 31492233
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| |||| || |||| ||| | |    
T  31492112 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtccca 31492211  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| |||||||||||||||||    
T  31492212 caatgctcgagggattagtctc 31492233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 553 - 671
Target Start/End: Original strand, 46373682 - 46373802
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    |||||||||||||||| |||  |||| ||||||||||||||||  ||||| ||||| ||||||||||| |||| |||||||||| || ||||||||   |    
T  46373682 gtctcttctagcttaagcaagatcctgggttcgaatccagtcttgggcatacaacatcgttaaaactcgtagggagagcttgccgcctatttgggtcaca 46373781  T
Q  651 caatactcgagggattagtct 671  Q
    |||| |||||| |||||||||    
T  46373782 caatgctcgagagattagtct 46373802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 672
Target Start/End: Complemental strand, 19477381 - 19477261
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  | || |||| |||||||| ||  |||||||||||  ||||||||||||||| ||||||||||  | |||||||| | |    
T  19477381 gtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagagcttgccggccatttgggtccca 19477282  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| || ||||||||||||||    
T  19477281 caatgct-gagggattagtctc 19477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 553 - 667
Target Start/End: Complemental strand, 13254233 - 13254117
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  ||||  |||||||||||| ||  |||||||| || |||| ||||||||||| ||||| |||| || |||| ||| | |    
T  13254233 gtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcctgccgcccatttaggtccca 13254134  T
Q  651 caatactcgagggatta 667  Q
    |||| ||||||||||||    
T  13254133 caatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 596 - 672
Target Start/End: Original strand, 20207551 - 20207627
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||| ||||||||||||||||||| | |||||||||| |  |||||| | ||||||| |||||||||||||||||    
T  20207551 ggcatgtaacaacgttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctc 20207627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 672
Target Start/End: Original strand, 35707902 - 35707976
Alignment:
Q  598 catgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||||||||| ||||||| ||| |||||| || |||| | | ||||||| |||||||||||||||||    
T  35707902 catgcaacaacgttaaaattcttagggagaacttgcctcccatttagatcctacaatgctcgagggattagtctc 35707976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 671
Target Start/End: Complemental strand, 21747171 - 21747052
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    |||||||||| |||||||||  |||| ||| |||||||||  |  |||||||  || |||||||||||||||| ||||| | ||||| |||||||| | |    
T  21747171 gtctcttctaacttaaccaaggtcctgggt-cgaatccagctttaggcatgctgcagcgttaaaactcttagggagagcctaccacccatttgggtccca 21747073  T
Q  651 caatactcgagggattagtct 671  Q
    |||| ||||||||||||||||    
T  21747072 caatcctcgagggattagtct 21747052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 580 - 646
Target Start/End: Original strand, 28537426 - 28537494
Alignment:
Q  580 ggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggt 646  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||| ||||| |||| || ||||||||    
T  28537426 ggttcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgccgcccatttgggt 28537494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 580 - 642
Target Start/End: Original strand, 40211989 - 40212053
Alignment:
Q  580 ggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaattt 642  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  40211989 ggttcaaatccagtcttgggcatgcaacaacgttaaaactcttaggaagagtttgtcacctattt 40212053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 646
Target Start/End: Complemental strand, 27484197 - 27484086
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtc--tggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||||||||||||||||||||||||  ||||  |||  ||||||| |   |||||||| || ||||||||||||| || ||||||| ||    
T  27484197 agatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatccagccatgggcatgcagcagcgttaaaactcttggggagagctttcc 27484098  T
Q  635 accaatttgggt 646  Q
    | | ||||||||    
T  27484097 atcgatttgggt 27484086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 539 - 671
Target Start/End: Complemental strand, 7265459 - 7265325
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccac 636  Q
    ||||||||| ||  ||||||||||||||||||||| |  | |||||| ||| |||||  |||||||| | | ||||||||||||||| |||| ||||  |    
T  7265459 atgagatgacacgggtctcttctagcttaaccaaagttttgggttcggatctagtcttgggcatgcagcgatgttaaaactcttagggagagtttgctgc 7265360  T
Q  637 caatttgggttctacaatactcgagggattagtct 671  Q
      |||||||| | |||||||||||  |||||||||    
T  7265359 tcatttgggtcccacaatactcgaatgattagtct 7265325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 609 - 672
Target Start/End: Complemental strand, 11486818 - 11486755
Alignment:
Q  609 gttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    ||||||||||||| |||||||||||| || |||||||||| ||||| ||| || ||||||||||    
T  11486818 gttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctc 11486755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 626
Target Start/End: Original strand, 12142619 - 12142710
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaag 626  Q
    |||||| |||| ||||  |||||||| |||||||||| |||| ||||||||| | |||   |||||||| || |||||||||||||||||||    
T  12142619 agatgaaatgacacaaaactcttctaacttaaccaaagtccttggttcgaattcggtcatgggcatgcagcatcgttaaaactcttaggaag 12142710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 672
Target Start/End: Complemental strand, 23933761 - 23933662
Alignment:
Q  575 tcctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||| |||||||||||||||| |  | ||||| | | |||||||| ||||| |||| ||||| || |||| ||||| |||||||| ||||||||||||||    
T  23933761 tcctgggttcgaatccagtcttgagcttgcaagagcattaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgagggattagtctc 23933662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 22022113 - 22022250
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  ||| ||||||||||||||||| ||  |  | ||||||||||||| ||  |||||||| || | |||||||||||||| ||| ||||||    
T  22022113 agatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgcagcagcattaaaactcttagggagaacttgcc 22022212  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
    ||| |||||||| | |||||| ||||||||||||||||    
T  22022213 acccatttgggtcccacaatattcgagggattagtctc 22022250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 12035558 - 12035680
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaa-ctcttaggaagagcttgccaccaatttgggttct 649  Q
    ||||||||||| ||||||||| || | ||||||||||||| ||  |||||||||||  ||||||| |||||||| ||||  |||| || |||||||| |     
T  12035558 gtctcttctagtttaaccaaagtctttggttcgaatccagcctttggcatgcaacattgttaaaaactcttagggagagtctgccgcccatttgggtccc 12035657  T
Q  650 acaatactcgagggattagtctc 672  Q
    ||||| |||||||||||||||||    
T  12035658 acaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 672
Target Start/End: Original strand, 28724666 - 28724802
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||  || |||||||||||||||||  ||| |||| | ||||||| ||| || |  |||||||||  ||||||||||||||||||||  ||||    
T  28724666 agatgagatggaacgagtctcttctagcttaat-aaagtcctggattcgaattcagccttgaacatgcaacagtgttaaaactcttaggaagagtctgcc 28724764  T
Q  635 accaatttgggttctacaatactcgagggattagtctc 672  Q
      | ||||| || |||||||  ||||||||||||||||    
T  28724765 gtccatttgagtcctacaatgttcgagggattagtctc 28724802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 672
Target Start/End: Original strand, 36806677 - 36806741
Alignment:
Q  608 cgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||||||| || |  |||| || |||||||||| ||||| |||||||||||||||||    
T  36806677 cgttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctc 36806741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 628
Target Start/End: Complemental strand, 7242916 - 7242862
Alignment:
Q  576 cctaggttcgaatccagtctgg--catgcaacaacgttaaaactcttaggaagag 628  Q
    |||||||||||||||||||| |  |||||| ||||||||||||||||||| ||||    
T  7242916 cctaggttcgaatccagtcttggacatgcagcaacgttaaaactcttagggagag 7242862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 669
Target Start/End: Complemental strand, 9781093 - 9781003
Alignment:
Q  581 gttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagt 669  Q
    |||||||||||| ||  |||||||| || |||||||||||||||| ||||   ||| || |||||||| | ||||| ||||||||||||||    
T  9781093 gttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagt 9781003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 52912638 - 52912696
Alignment:
Q  561 tagcttaaccaaactcctaggttcgaatccagtctggcatgcaacaacgttaaaactct 619  Q
    ||||||||||||  || | |||||||||||||||| ||||| | |||||||||||||||    
T  52912638 tagcttaaccaagatcttgggttcgaatccagtcttgcatgtagcaacgttaaaactct 52912696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 26340 - 26461
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||| |||| || |||||||| | |    
T  26340 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtccca 26439  T
Q  651 caatactcgagggattagtctc 672  Q
    ||||  ||||| ||||||||||    
T  26440 caatgttcgagagattagtctc 26461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 672
Target Start/End: Original strand, 10591936 - 10592057
Alignment:
Q  553 gtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttcta 650  Q
    ||||||||||| ||||||||  |||| ||||||||||||| ||  |||||||| ||  ||||||||||||||| ||||  |||| || ||||| || | |    
T  10591936 gtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtccca 10592035  T
Q  651 caatactcgagggattagtctc 672  Q
    |||| |||||||||||||||||    
T  10592036 caatgctcgagggattagtctc 10592057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 672
Target Start/End: Complemental strand, 5123585 - 5123509
Alignment:
Q  596 ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||| ||  ||||||||||||||| ||||| |||| || |||||||| | ||||| |||||||||||||||||    
T  5123585 ggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctc 5123509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 672
Target Start/End: Original strand, 31113367 - 31113464
Alignment:
Q  577 ctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||| ||| ||  |||||||| ||  ||||||||||||||| ||||| | || || |||||| | | |||||||||||||||||||||||    
T  31113367 ctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctc 31113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 620
Target Start/End: Original strand, 12682630 - 12682713
Alignment:
Q  539 atgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtctgg--catgcaacaacgttaaaactctt 620  Q
    ||||||||| || ||||||||||||||||| |||  | ||  |||||||||||| || |  |||||||||||||||||||||||    
T  12682630 atgagatgaaacgagtctcttctagcttaagcaatgttctgagttcgaatccagccttgagcatgcaacaacgttaaaactctt 12682713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 623
Target Start/End: Complemental strand, 30785134 - 30785046
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccag-tctgg-catgcaacaacgttaaaactcttagg 623  Q
    ||||||||||  || ||||||||||||||||| |||  || | ||||||||||||| | ||| |||||| |||||||||||||||||||    
T  30785134 agatgagatggaacgagtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgcagcaacgttaaaactcttagg 30785046  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 672
Target Start/End: Complemental strand, 2798444 - 2798326
Alignment:
Q  556 tcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaa 653  Q
    |||||||||||||||||  | || ||||||||||||  ||   ||||||| || |||||||||| ||||| ||||||| || || |||||| ||||||||    
T  2798444 tcttctagcttaaccaaggttctgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagagcttaccgcccatttggtttctacaa 2798345  T
Q  654 tactcgagggattagtctc 672  Q
    | ||| || ||||| ||||    
T  2798344 tgctctagagattaatctc 2798326  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 672
Target Start/End: Complemental strand, 32313183 - 32313117
Alignment:
Q  606 aacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcgagggattagtctc 672  Q
    |||||||||||||||| | |||| ||||  || ||||  || |||||||||||||||||||||||||    
T  32313183 aacgttaaaactcttaaggagagtttgctgcccatttaagtcctacaatactcgagggattagtctc 32313117  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 537 - 634
Target Start/End: Complemental strand, 3526001 - 3525903
Alignment:
Q  537 agatgagatgatacaagtctcttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgcc 634  Q
    ||||||||||| ||| ||||||||||| ||||||||  | ||| ||||||||||| |||  | |||||||||  ||||||||| ||||| |||| |||||    
T  3526001 agatgagatgacacatgtctcttctagtttaaccaagattcta-gttcgaatccactcttagacatgcaacattgttaaaacttttagggagagtttgcc 3525903  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 558 - 671
Target Start/End: Complemental strand, 18909428 - 18909313
Alignment:
Q  558 ttctagcttaaccaaactcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaata 655  Q
    ||||||||||| |||  |||||||||||||||||| ||  || ||||| ||  ||||||||||||||| |||  ||||| |  |||||  | | |||||     
T  18909428 ttctagcttaatcaaggtcctaggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagaatttgccgctcatttgaatcccacaatg 18909329  T
Q  656 ctcgagggattagtct 671  Q
    ||||||||||||||||    
T  18909328 ctcgagggattagtct 18909313  T

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Target: scaffold0189 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 660
Target Start/End: Original strand, 10983 - 11070
Alignment:
Q  575 tcctaggttcgaatccagtct--ggcatgcaacaacgttaaaactcttaggaagagcttgccaccaatttgggttctacaatactcga 660  Q
    ||||||||||||||||| | |  |||||||||||| ||||||||||||| | |||| ||||| || |||| ||||  |||| ||||||    
T  10983 tcctaggttcgaatccatttttgggcatgcaacaatgttaaaactcttacggagagtttgccgcccatttaggtttcacaaaactcga 11070  T

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