View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_high_4 (Length: 489)
Name: NF11752_high_4
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 287
Target Start/End: Original strand, 27242001 - 27242251
Alignment:
| Q |
38 |
aaatgtaaatccttttaaaattgttgtttgagccataatgtctttcatgtacaaccatcctattcctatcacactaaatttttctcataagaaaattgag |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27242001 |
aaatgtaaatccttttaaaattgttgtttgagccataatttttttcatttacaaccatcctattcctatcacactaaatttttctcataagaaaatagag |
27242100 |
T |
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| Q |
138 |
cggttcaatccctcaatatatacaacttttaacc-nnnnnnnaatttgaggtaaaacagtttttaacagtagagaaaataatctgaaacttgtgaatttt |
236 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27242101 |
cggttcaatccctcaatatatacaacttttaaccttttttttaatttgaggtaaaacagtttttaacagtagagaaaataatctgaaacttgtgaatttt |
27242200 |
T |
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| Q |
237 |
accatcggatatggtcaatcaaaatagagagagataagggcaaattgtatg |
287 |
Q |
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||| | ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27242201 |
accgttggatatggtcaatcaaaatggagagagataagggcaaattgtatg |
27242251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 27241949 - 27241984
Alignment:
| Q |
18 |
tatctaacttaaaagaaagtaaatgtaaatcctttt |
53 |
Q |
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| T |
27241949 |
tatctaacttaaaagaaagtaaatgtaaatcctttt |
27241984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 472
Target Start/End: Original strand, 22969377 - 22969415
Alignment:
| Q |
434 |
attccacgaaacataagaataacacagcctaccatgatg |
472 |
Q |
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| T |
22969377 |
attccacgaaacctaagaataacacagcctaccatgatg |
22969415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 472
Target Start/End: Original strand, 38073989 - 38074027
Alignment:
| Q |
434 |
attccacgaaacataagaataacacagcctaccatgatg |
472 |
Q |
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|||||||||||| ||||||| |||||||||||||||||| |
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| T |
38073989 |
attccacgaaacctaagaatcacacagcctaccatgatg |
38074027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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