View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_high_6 (Length: 355)
Name: NF11752_high_6
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 70 - 347
Target Start/End: Complemental strand, 29313419 - 29313143
Alignment:
| Q |
70 |
agaagaggaagataagaacaacttcgatttggttgatcttagaagcaaagacatggtgattgattatcaattgagagaatagaacaatcgtgctaagtgt |
169 |
Q |
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| T |
29313419 |
agaagaggaagataagagcaacttcgatttggttgatcttagaagcaaagacatggtgattgattatcaattgagagaatagaacaatcgagctaagtgt |
29313320 |
T |
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| Q |
170 |
ggtgatactaacaagttcaattatttgggattgcgcgctacat-tgacggaggaagtgtgaaaatcctattggnnnnnnnnnaggaaacagttcactgtt |
268 |
Q |
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| T |
29313319 |
ggtgatactaacaagttccattatttgggattgcgcgctacatctgacggaggaagtgtgaaaatcctgtt--tttttttttaggaaacagttcaccgtt |
29313222 |
T |
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| Q |
269 |
ttgaagaccagttcggtttgattcgaattgttccattatggttcagttcagttcaaacgaactgaaaaattggttcgga |
347 |
Q |
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| T |
29313221 |
ttgaagaccagttcggtttgattcgagttgttcaattttggttcaattcagttcaaacggactgaaaaattggttcgga |
29313143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 29313531 - 29313477
Alignment:
| Q |
17 |
agggaagagtggtggttttgcggtggaagttttcagcggcggcggtgggagagag |
71 |
Q |
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| T |
29313531 |
agggaagagtgatggtgttacggtggaagttttcagcgaaggcggtgggagagag |
29313477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 16983133 - 16983224
Alignment:
| Q |
70 |
agaagaggaagataagaacaacttcgatttggttgatcttagaagcaaagacatgg----tgattgattatcaattgagagaatagaacaat |
157 |
Q |
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| T |
16983133 |
agaagaggaagataagaagagctttgattttgttgatctgagaagccaagacatggtgattgattgattatcaattcagagaatagaacaat |
16983224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 16553069 - 16553026
Alignment:
| Q |
279 |
gttcggtttgattcgaattgttccattatggttcagttcagttc |
322 |
Q |
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| T |
16553069 |
gttcggtttggttcgaattgtttcattatagttcagttcagttc |
16553026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 40997726 - 40997654
Alignment:
| Q |
253 |
gaaacagttcactgttttgaagaccagttcggtttgattcgaattgttccattatggttcagttcagttcaaa |
325 |
Q |
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| T |
40997726 |
gaaacagttcacaatttttaagaccagttcagtttggtttaaattgtttcattatggtgcagttcagttcaaa |
40997654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 52421890 - 52421823
Alignment:
| Q |
254 |
aaacagttcactgttttgaagaccagttcggtttgattcgaattgttccattatggttcagttcagtt |
321 |
Q |
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| T |
52421890 |
aaacagttaactattttgaaaaccagttcagtttggttcaaactattgcattatggttcagttcagtt |
52421823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 31531943 - 31531895
Alignment:
| Q |
290 |
ttcgaattgttccattatggttcag-ttcagttcaaacgaactgaaaaa |
337 |
Q |
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| T |
31531943 |
ttcgaattgttccattatggttttggttcagttcaaacgaactgaaaaa |
31531895 |
T |
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