View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_high_9 (Length: 241)
Name: NF11752_high_9
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 1215992 - 1216112
Alignment:
| Q |
1 |
taattatcaaatgaaaatgaactgtaatcatttataactagagactagttaccgttacaacttagaaaaccactaaataagagtgctacctttttgacaa |
100 |
Q |
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| T |
1215992 |
taattatcaaatgaaaatgaactgtaatcatttataactagagacgagttaccgttacaacttagaaaaccactaaataagagtgctacctttttgacaa |
1216091 |
T |
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| Q |
101 |
tcttgaaattggttcatgact |
121 |
Q |
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| T |
1216092 |
tcttgaaattggttcatgact |
1216112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 1216093 - 1216177
Alignment:
| Q |
131 |
cttgaaattggttcatgactcagttgcttagaggttgtattttcatattttgttttgttgcccgttgttgtccactatgacaagggtgctataat |
225 |
Q |
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| T |
1216093 |
cttgaaattggttcatgactcagttgcttagaggttgtattttcatattttgttttgt----------tgtccactatgacaagggtgctataat |
1216177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 23230068 - 23230130
Alignment:
| Q |
10 |
aatgaaaatgaactgtaatcatttataactagagactagttaccgttacaacttagaaaaccactaaa |
77 |
Q |
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| T |
23230068 |
aatgaaaatgaactatattcatttataactagag-----ttaccgttacagcttagaaaaccactaaa |
23230130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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