View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11752_low_1 (Length: 848)
Name: NF11752_low_1
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Original strand, 34419594 - 34420149
Alignment:
| Q |
13 |
cacagaccaaggtgattcctgttacaatgtagttatgtttgtttttatttatagtacatgtttgtctccttccttaaagtataggctgtctagggttaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
34419594 |
cacagaccaaggtgattcctgttacaatgttattatgtttgtttttatttgtagtacatgtttgtctcctt----aaagtataggctgtttaggattaat |
34419689 |
T |
|
| Q |
113 |
ctgtatcgctc-tctgttaaggcattacctgtttttcatctttgctggtggcataataaagctcaacaccagttctgaatcttccaatattgtactgact |
211 |
Q |
| |
|
|||| | | | ||| ||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
34419690 |
ttgtaccccccctcttttatgacattacctgtttttcatctttccttgtggcataataaagctcaacaccagttctgaattttccgatattgtactgact |
34419789 |
T |
|
| Q |
212 |
tatggaacttgatctttttgtcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtatagaagaaaaa |
311 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34419790 |
tatggaactt-------ttgtcatggttattgctgaagagcttcaacatttgagaaacagtctacctgatcatgtacttgttcagcgtatagaagaaaaa |
34419882 |
T |
|
| Q |
312 |
ttgtctgctctgggaaaatgtatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggtattgtcttattatagataatagccttttt |
411 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
34419883 |
ttgtctgctctgggaaattgtatagcatgcaatgaccatgttgcccttgcacacgctgatctcgacaaggtattgccttgttatagataatagccttttt |
34419982 |
T |
|
| Q |
412 |
ctgtgg---taatgtctcatacttatttcatatttgaaattaacttggtgatagacttgtattttcatgttaaattaacattggtgctgaatagaggtgt |
508 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
34419983 |
-tgtggtaataatgtctcatacttatgtcatatttgaaattaacttggtgatagacttgtatttccatgttaaattaacatcgttgctgaatagaggtgt |
34420081 |
T |
|
| Q |
509 |
acaatcagatgctcagtacttgtcactataaatctgttcgtgtaattttaggttatgatcatggaaatt |
577 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
34420082 |
acaatcagatgctcagtacttgtcactgtaaatctgctcacttaa-attaggttatgatcatggaaatt |
34420149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 34423976 - 34424181
Alignment:
| Q |
205 |
actgacttatggaacttgatctttttgtcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtataga |
304 |
Q |
| |
|
||||||||| |||| ||||| ||||| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
34423976 |
actgacttaaggaaattgatatttttttcatggctattgttgaagaacttcaacatttgaaaaacagtctacctgatcgagtttgtgttcagcgcataga |
34424075 |
T |
|
| Q |
305 |
agaaaaattgtctgctctgggaaaatgtatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggtattgtcttattatagataatag |
404 |
Q |
| |
|
||||| ||| |||||||||||||| ||||| ||||| ||||||||||| ||||| | ||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
34424076 |
agaaagattatctgctctgggaaattgtattgcatgtaatgaccatgtggccctcacgcacaccgatctcgacaaggtattgtgttattatagattatag |
34424175 |
T |
|
| Q |
405 |
cctttt |
410 |
Q |
| |
|
| |||| |
|
|
| T |
34424176 |
cttttt |
34424181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 232 - 404
Target Start/End: Original strand, 24346783 - 24346956
Alignment:
| Q |
232 |
tcatgtttattgttgaagagcttcagcatttgagaaacagtctacctgatcatgttgttgttcagcgtatagaagaaaaattgtctgctctgggaaaatg |
331 |
Q |
| |
|
||||| |||||| || ||| ||||| |||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| |||||| ||||||| || |
|
|
| T |
24346783 |
tcatggttattgctgcagaacttcaacatttgagaaacagtctacccgatcaagttgttgttcagaggatagaagaaaaattatctgctttgggaaattg |
24346882 |
T |
|
| Q |
332 |
tatagcatgcaatgaccatgttgcccttgcacacactgatctcgacaaggta-ttgtcttattatagataatag |
404 |
Q |
| |
|
||||||||| ||||||||||| || || | ||||| ||||| |||| |||| |||||||||| ||||| |||| |
|
|
| T |
24346883 |
tatagcatgtaatgaccatgtggctctcactcacaccgatcttgacagggtatttgtcttattgtagattatag |
24346956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University