View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_low_10 (Length: 244)
Name: NF11752_low_10
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1215914 - 1215681
Alignment:
| Q |
1 |
aaattggaac-ataaagggatgatgtttgtataaacgagtccattgtattattaacctgcatgcactctagttcaattcatcaaagctatttgagatttg |
99 |
Q |
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| T |
1215914 |
aaattggaacgataaagagatgatgtttgtataaacgagtccattgtattattaacctgcatgcactctagttcaattcatcaaagctatttgagatttg |
1215815 |
T |
|
| Q |
100 |
tgatttatggaagtagcaaaaataggagttccttgcagcccaaagcaccaaagcgagagaactactgtcaagttctgttttggactgaatggagctccca |
199 |
Q |
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| T |
1215814 |
tgatttatggaagtagcaaaaataggagttccttgcagcccaaagcaccaaagcgagagaactactgtcaagttctgttttggactgaatggagctccca |
1215715 |
T |
|
| Q |
200 |
gttcttcgcttacattcttttaatgtttcatctc |
233 |
Q |
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| T |
1215714 |
gttcttcgcttacattattttaatgtttcatctc |
1215681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 230
Target Start/End: Complemental strand, 23229957 - 23229790
Alignment:
| Q |
62 |
gcactctagttcaattcatcaaagctatttgagatttgtgatttatggaagtagcaaaaataggagttccttgcagcccaaagcaccaaagcgagagaac |
161 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| |||| |||||||||||||||||||||| || ||| |||| | |
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| T |
23229957 |
gcactcttgttcaattcatcaaagctatttgagatttgtgatatatgaaagttgcagaaatgggagttccttgcagcccaaagcgcc-aagtgagaattc |
23229859 |
T |
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| Q |
162 |
tactgtcaagttctgttttggactgaatggagctcccagttcttcgcttacattcttttaatgtttcat |
230 |
Q |
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| T |
23229858 |
tactggcaaattatgttttggactgaagggagctcccagttcttcgctttcatcctttttatttttcat |
23229790 |
T |
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