View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_low_2 (Length: 769)
Name: NF11752_low_2
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_low_2 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 265 - 752
Target Start/End: Original strand, 72974 - 73462
Alignment:
| Q |
265 |
caccaccaccaacacccccgctccttaactcgcta-cacctgctgcccgccactcctttctcccatctttagttaacaaattgaagctattgagagtttc |
363 |
Q |
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|||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72974 |
caccacaaccaacacctccgctccctaactcgctaacacctgctgcccgccactcctttctcccatctttagttaacaaattgaagctattgagagtttc |
73073 |
T |
|
| Q |
364 |
acaattatacttcgccccaataacctttccaatatctctaacatcttctgacaccacctttgggttaccatgaaacactacccagttctcccaatcctta |
463 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73074 |
acaattataattcaccccaataacctttccaatatctctaacatcttccgacaccacctttgggttaccatgaaacactacccagttctcccaatcctta |
73173 |
T |
|
| Q |
464 |
ttagctaaagaaaatgaattttgaagggaattagaagtattcgctgctgcctttgaattttgctcagacatcctacccttacctttccttcnnnnnnnat |
563 |
Q |
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||| || ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
73174 |
ttaactgaagaatatgaatttttaagggaatcagaagtattcgctgctgcctttgaattttgctcagacatcctacccttacctttccttctttttttat |
73273 |
T |
|
| Q |
564 |
ttaaaattttcaaaatatcctttctatggacatccggcattctcgctattcttttcataaaaccaacataaattattacttgacccttttgcttcttctt |
663 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
73274 |
ttaaaattttcaaaatatcctttctatggacatccgacattctcgctattcttttcataaaaccaacagaaattattacttgaccctgttgcttcttctt |
73373 |
T |
|
| Q |
664 |
agttaaaactttcgaaggcaaggcattatttttctccaaacgtgcatcagattcagtaataaactcaacagaacgagtagatgtaaaaa |
752 |
Q |
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| T |
73374 |
agttaaaactttcgaaggcaacgcattatttttctccaaacgtgcatcagattcagcaataaactcaacagaacgagtagatgtaaaaa |
73462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 72486 - 72738
Alignment:
| Q |
16 |
acatcacaccacctttcagacagtaaaaatcgatccaacctgctcatagaaataccgtcaccacggtaccaagtaaacaaccta----ccacaaatag-t |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| | |||||||||| | |
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| T |
72486 |
acatcacaccacctttcagacagtaaaaatcgatccaacctgctcattgaaataccaacaccatggtaccaagtaaacaataaaagcaccacaaataggt |
72585 |
T |
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| Q |
111 |
aaatcaatcaaagcaccatcaacaataaaattattaaacatgtcagcatatgcctgtctaaaaatcatcccccttcctttacgttcttcttcatgtctga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||| ||||||||||||||||| |
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| T |
72586 |
aaatcaatcaaagcaccatcaacaataaaattattaaacatgtcagcatttgcctgtctaaaa-taatcccctttcctttacattcttcttcatgtctga |
72684 |
T |
|
| Q |
211 |
aaacattgaaatccccacacaagcataaccaattatcaccaatattattaataa |
264 |
Q |
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| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
72685 |
cagcattgaaatccccacacaaacataaacaattatcaccaatattattaataa |
72738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 22743097 - 22743227
Alignment:
| Q |
19 |
tcacaccacctttcagacagtaaaaatcgatccaacctgctcatagaaataccgtcaccacggtaccaagtaaacaacctaccaca-aatagtaaatcaa |
117 |
Q |
| |
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|||||||| || |||||| |||||||| ||| ||||||||||| || ||||| |||||||| |||||||||||||| |||||| | ||| ||||||||| |
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| T |
22743097 |
tcacaccattttccagacaataaaaatctatcaaacctgctcattgatataccatcaccacgataccaagtaaacaatctaccatataatggtaaatcaa |
22743196 |
T |
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| Q |
118 |
tcaaagcaccatcaacaataaaattattaaa |
148 |
Q |
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||||| || | | |||||||||||||||| |
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| T |
22743197 |
tcaaaaaacaaccgtcaataaaattattaaa |
22743227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 45719796 - 45719884
Alignment:
| Q |
19 |
tcacaccacctttcagacagtaaaaatcgatccaacctgctcatagaaataccgtcaccacggtaccaagtaaacaacctaccacaaat |
107 |
Q |
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||||||||| | ||||||| ||||| |||||||| || ||||| |||| |||||||| |||||||||||||| |||| ||||||||| |
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| T |
45719796 |
tcacaccacttatcagacaacaaaaaacgatccaatctactcatcgaaactccgtcaccgcggtaccaagtaaataaccgaccacaaat |
45719884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 15138101 - 15138027
Alignment:
| Q |
18 |
atcacaccacctttcagacagtaaaaatcgatccaacctgctcatagaaataccgtcaccacggtaccaagtaaa |
92 |
Q |
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||||||||| || |||||| ||||||||||| | ||||||||| |||||||| |||||||| ||||||||||| |
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| T |
15138101 |
atcacaccattttgcagacacgaaaaatcgatcaatcctgctcatcgaaataccatcaccacgataccaagtaaa |
15138027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 26244048 - 26243960
Alignment:
| Q |
19 |
tcacaccacctttcagacagtaaaaatcgatccaacctgctcatagaaataccgtcaccacggtaccaagtaaacaacctaccacaaat |
107 |
Q |
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||||||||| | ||||||| ||||| ||||||| || ||||| |||| |||||||| |||||||||||||| |||| ||||||||| |
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| T |
26244048 |
tcacaccacttatcagacaacaaaaaaagatccaatctactcatcgaaactccgtcaccgcggtaccaagtaaataaccgaccacaaat |
26243960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 14974192 - 14974104
Alignment:
| Q |
19 |
tcacaccacctttcagacagtaaaaatcgatccaacctgctcatagaaataccgtcaccacggtaccaagtaaacaacctaccacaaat |
107 |
Q |
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||||||||| | ||||||| ||||| |||||||| || ||||| |||| |||||||| |||||||||||||| |||| ||||||||| |
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| T |
14974192 |
tcacaccacttatcagacaacaaaaaacgatccaatctactcatcgaaactccgtcaccgcggtaccaagtaaataaccgaccacaaat |
14974104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 42901645 - 42901544
Alignment:
| Q |
48 |
atccaacctgctcatagaaataccgtcaccacggtaccaagtaaacaacctaccaca-aatagtaaatcaatcaaagcaccatcaacaataaaattatta |
146 |
Q |
| |
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|||||| |||||||| || ||||| |||||||| ||| |||||||||| | ||||| || |||||||||||||| | |||| || |||||||||| ||| |
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| T |
42901645 |
atccaatctgctcattgagataccatcaccacgatactaagtaaacaatttgccacataacagtaaatcaatcaaggaaccaccatcaataaaattgtta |
42901546 |
T |
|
| Q |
147 |
aa |
148 |
Q |
| |
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|| |
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|
| T |
42901545 |
aa |
42901544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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