View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11752_low_3 (Length: 517)

Name: NF11752_low_3
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11752_low_3
NF11752_low_3
[»] chr8 (2 HSPs)
chr8 (22-512)||(294298-294788)
chr8 (157-218)||(4561103-4561164)
[»] chr4 (2 HSPs)
chr4 (180-218)||(46676699-46676737)
chr4 (175-218)||(17912817-17912860)
[»] scaffold0167 (1 HSPs)
scaffold0167 (177-218)||(23493-23534)
[»] chr2 (2 HSPs)
chr2 (182-218)||(10084306-10084342)
chr2 (157-206)||(40149015-40149064)
[»] chr1 (4 HSPs)
chr1 (180-219)||(13031125-13031164)
chr1 (179-218)||(31626239-31626278)
chr1 (164-218)||(19809943-19809997)
chr1 (173-219)||(21641404-21641450)
[»] chr6 (1 HSPs)
chr6 (164-210)||(15544484-15544530)
[»] chr5 (2 HSPs)
chr5 (180-218)||(15844510-15844548)
chr5 (173-219)||(22198985-22199031)


Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 22 - 512
Target Start/End: Original strand, 294298 - 294788
Alignment:
Q  22 aagtaaagccgcatggatggcttaaatttaaaacaataacgctcccgatctatgaagcaccaacttaaacatagacactgtgaagggtcccacattgaaa 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294298 aagtaaagccgcatggatggtttaaatttaaaacaataacgctcccgatctatgaagcaccaacttaaacatagacactgtgaagggtcccacattgaaa 294397  T
Q  122 gagatatcacatgaacatgagtcaataagtgataaacaatcgtcacctcacaggccgattttgtaggattgagttaggtccaacccaaattttaagagac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294398 gagatatcacatgaacatgagtcaataagtgataaacaatcgtcacctcacaggccgattttgtaggattgagttaggtccaacccaaattttaagagac 294497  T
Q  222 actacaccaacgttaacaagccggacatgtgtcgtggccaaataattgaatgtaatcacatgtgtcatgccaagccgcggacacatcttcaatccgaggt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294498 actacaccaacgttaacaagccggacatgtgtcgtggccaaataattgaatgtaatcacatgtgtcatgccaagccgcggacacatcttcaatccgaggt 294597  T
Q  322 gtcggtctgtgctatagcctgttttggttgctctgagcattcacattgcagaatcctaccttatactaaaattcaattttatttagacaacaagaaaggg 421  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  294598 gtcagtctgtgctatagcctattttggttgctctgagcattcacattgcagaatcctaccttatactaaaattcaattttatttagacaacaagtaaggg 294697  T
Q  422 gttaatgatgcataccttttttagaataactttatccttagatttgggttccaaccttgttgccttggatcttcctctctgctcctcctca 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  294698 gttaatgatgcataccttttttagaataactttatccttagatttgggttccaaccttgttgccttggatcttcctctcttgtcctcctca 294788  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 4561164 - 4561103
Alignment:
Q  157 acaatcgtcacctcacaggccgattttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    |||||| |||||| ||| |||||||||||||| | ||||||||| || |||||||| |||||    
T  4561164 acaatcatcacctaacaagccgattttgtagggtagagttaggttcatcccaaattataaga 4561103  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 46676699 - 46676737
Alignment:
Q  180 ttttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  46676699 ttttgtagggttgagttaggtccaacccaaattttaaga 46676737  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 17912817 - 17912860
Alignment:
Q  175 gccgattttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||    
T  17912817 gccggttttgtagggttgagttaggcccaacccaaattttaaga 17912860  T

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Target: scaffold0167 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 23493 - 23534
Alignment:
Q  177 cgattttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  23493 cgattttgtaggattgagttaggtccaactcaatttttaaga 23534  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 10084306 - 10084342
Alignment:
Q  182 ttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10084306 ttgtaggattgagttatgtccaacccaaattttaaga 10084342  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 40149064 - 40149015
Alignment:
Q  157 acaatcgtcacctcacaggccgattttgtaggattgagttaggtccaacc 206  Q
    |||||| |||||||||| ||||||||||| || ||| |||||||||||||    
T  40149064 acaatcctcacctcacaagccgattttgtggggttgtgttaggtccaacc 40149015  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 13031164 - 13031125
Alignment:
Q  180 ttttgtaggattgagttaggtccaacccaaattttaagag 219  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  13031164 ttttgtagggttgagttaggtccaacccaaattctaagag 13031125  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 31626278 - 31626239
Alignment:
Q  179 attttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  31626278 attttgtagggttgagttaggtccaacccaaattctaaga 31626239  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 19809997 - 19809943
Alignment:
Q  164 tcacctcacaggccgattttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    |||||| ||| |||||||||||| | |||||||||| |||||||||| |||||||    
T  19809997 tcaccttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaaga 19809943  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 21641450 - 21641404
Alignment:
Q  173 aggccgattttgtaggattgagttaggtccaacccaaattttaagag 219  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||    
T  21641450 aggccggttttgtaaggttgagttaggcccaacccaaattttaagag 21641404  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 15544530 - 15544484
Alignment:
Q  164 tcacctcacaggccgattttgtaggattgagttaggtccaacccaaa 210  Q
    |||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  15544530 tcacctcacaagccggttttgtaagattcagttaggtccaacccaaa 15544484  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 15844548 - 15844510
Alignment:
Q  180 ttttgtaggattgagttaggtccaacccaaattttaaga 218  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  15844548 ttttgtaagattgagttaggcccaacccaaattttaaga 15844510  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 22199031 - 22198985
Alignment:
Q  173 aggccgattttgtaggattgagttaggtccaacccaaattttaagag 219  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||    
T  22199031 aggccggttttgtaaggttgagttaggcccaacccaaattttaagag 22198985  T

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