View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_low_4 (Length: 513)
Name: NF11752_low_4
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 160 - 502
Target Start/End: Complemental strand, 29312970 - 29312628
Alignment:
| Q |
160 |
gtttaccataatatttcttatttaattaatacattcaatttgcccttagggacacttctcacttttgccaggtccaccataatgcatgtaatttccccaa |
259 |
Q |
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| T |
29312970 |
gtttaccataatatgtgttattcaattaatacattcaatgttcctttagggacacttctcacttttgccaggtccaccataatgcatgtaatttccccaa |
29312871 |
T |
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| Q |
260 |
tctttattataccatggtcttaaaggataacattctggtgtgtctgctgcccaatcaggatctggtaggtcaatatacacgttttgttcagtaactgaaa |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
29312870 |
tctttattataccatggtcttaaaggataacattctggtttgtctgctgcccaatcaggatctggtaggtcaatatagacgttttgttcagtaaccgaaa |
29312771 |
T |
|
| Q |
360 |
cttgcatatttctaataaatgcaactttattaatgctatttaattcaaaatgtccactacccatttgggtggtagtatgagatcctgttctctttaaatt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312770 |
cttgcatatttctaataaatgcaactttattaatgctattgaattcaaaatgtccactacccatttgggtggtagtatgagatcctgttctctttaaatt |
29312671 |
T |
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| Q |
460 |
gagaacttctccaccaaattcaacaatatatgcttcacccttt |
502 |
Q |
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| T |
29312670 |
gagaacttctccaccaaattcaacaatatatgcttcacccttt |
29312628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 29313136 - 29313004
Alignment:
| Q |
1 |
tttggatttgaactgaactttggccattcttacttttagtga----ttggttattgtccaaatgagttcgcatcaacaataataatacgatataagaatc |
96 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || | | ||| || ||||||| | |
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| T |
29313136 |
tttggatctgaactgaactttggccattcttacttttagtgactgattggttatcgtccaaatgagttcgcatcaaaaaaattgataagaaataagaacc |
29313037 |
T |
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| Q |
97 |
tttaatttggacataggaataaaacaccacaat |
129 |
Q |
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| T |
29313036 |
tttaatttggacataggaataaaacaccacaat |
29313004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 406 - 502
Target Start/End: Complemental strand, 29359230 - 29359134
Alignment:
| Q |
406 |
aaaatgtccactacccatttgggtggtagtatgagatcctgttctctttaaattgagaacttctccaccaaattcaacaatatatgcttcacccttt |
502 |
Q |
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||||| |||||||||||||||||| ||||||||||| |||| |||| ||||||| || |||||||||||||||| | ||| |||||||||||||||| |
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| T |
29359230 |
aaaatttccactacccatttgggtagtagtatgagaccctgatctcattaaattcagtacttctccaccaaattgagcaaaatatgcttcacccttt |
29359134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 500
Target Start/End: Complemental strand, 29290359 - 29290210
Alignment:
| Q |
351 |
taactgaaacttgcatatttctaataaatgcaactttattaatgctatttaattcaaaatgtccactacccatttgggtggtagtatgagatcctgttct |
450 |
Q |
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|||||| |||||||||||| |||||| ||||| |||| |||| | | | |||||||||||||||||||||||||||| ||||||| | || ||| | |
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| T |
29290359 |
taactgcaacttgcatattcctaatatatgcagcttttttaaaacgtcctgaatcaaaatgtccactacccatttgggtggaagtatgaaacccagttgt |
29290260 |
T |
|
| Q |
451 |
ctttaaattgagaacttctccaccaaattcaacaatatatgcttcaccct |
500 |
Q |
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|||||||||||||||| ||||||||||| | ||| || | ||||||||| |
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| T |
29290259 |
atttaaattgagaacttgtccaccaaattgagcaaaatctccttcaccct |
29290210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 29344244 - 29344174
Alignment:
| Q |
312 |
aatcaggatctggtaggtcaatatacacgttttgttcagtaactgaaacttgcatatttctaataaatgca |
382 |
Q |
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||||||||||||| | ||||||||| || |||||||||||||||| ||||| ||| ||| | ||||||||| |
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| T |
29344244 |
aatcaggatctggcaagtcaatatagacattttgttcagtaactgcaactttcattttttttataaatgca |
29344174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 502
Target Start/End: Complemental strand, 29344148 - 29344051
Alignment:
| Q |
405 |
caaaatgtccactacccatttgggtggtagtatgagatcctgttctctttaaattgagaacttctccaccaaattcaacaatatatgcttcacccttt |
502 |
Q |
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||||||||||||||||||||| || | ||||||| |||| | ||||||||||| |||||||| || |||||| ||| |||||||||||||||| |
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| T |
29344148 |
caaaatgtccactacccatttcagttgatgtatgagcccctgatggctttaaattgaacacttctccgccgaattcagcaaaatatgcttcacccttt |
29344051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 29236025 - 29235989
Alignment:
| Q |
405 |
caaaatgtccactacccatttgggtggtagtatgaga |
441 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
29236025 |
caaaatgtccactacccatttgggtggaagtatgaga |
29235989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 29280758 - 29280722
Alignment:
| Q |
405 |
caaaatgtccactacccatttgggtggtagtatgaga |
441 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
29280758 |
caaaatgtccactacccatttgggtggaagtatgaga |
29280722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 43813654 - 43813692
Alignment:
| Q |
408 |
aatgtccactacccatttgggtggtagtatgagatcctg |
446 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |
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| T |
43813654 |
aatgtccactacccatttgggtggaagtatgagagcctg |
43813692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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