View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11752_low_8 (Length: 355)

Name: NF11752_low_8
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11752_low_8
NF11752_low_8
[»] chr8 (2 HSPs)
chr8 (70-347)||(29313143-29313419)
chr8 (17-71)||(29313477-29313531)
[»] chr4 (2 HSPs)
chr4 (70-157)||(16983133-16983224)
chr4 (279-322)||(16553026-16553069)
[»] chr3 (2 HSPs)
chr3 (253-325)||(40997654-40997726)
chr3 (254-321)||(52421823-52421890)
[»] chr5 (1 HSPs)
chr5 (290-337)||(31531895-31531943)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 70 - 347
Target Start/End: Complemental strand, 29313419 - 29313143
Alignment:
Q  70 agaagaggaagataagaacaacttcgatttggttgatcttagaagcaaagacatggtgattgattatcaattgagagaatagaacaatcgtgctaagtgt 169  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29313419 agaagaggaagataagagcaacttcgatttggttgatcttagaagcaaagacatggtgattgattatcaattgagagaatagaacaatcgagctaagtgt 29313320  T
Q  170 ggtgatactaacaagttcaattatttgggattgcgcgctacat-tgacggaggaagtgtgaaaatcctattggnnnnnnnnnaggaaacagttcactgtt 268  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||           |||||||||||||| |||    
T  29313319 ggtgatactaacaagttccattatttgggattgcgcgctacatctgacggaggaagtgtgaaaatcctgtt--tttttttttaggaaacagttcaccgtt 29313222  T
Q  269 ttgaagaccagttcggtttgattcgaattgttccattatggttcagttcagttcaaacgaactgaaaaattggttcgga 347  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| |||||||||||||||||||    
T  29313221 ttgaagaccagttcggtttgattcgagttgttcaattttggttcaattcagttcaaacggactgaaaaattggttcgga 29313143  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 29313531 - 29313477
Alignment:
Q  17 agggaagagtggtggttttgcggtggaagttttcagcggcggcggtgggagagag 71  Q
    ||||||||||| |||| || ||||||||||||||||||  |||||||||||||||    
T  29313531 agggaagagtgatggtgttacggtggaagttttcagcgaaggcggtgggagagag 29313477  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 16983133 - 16983224
Alignment:
Q  70 agaagaggaagataagaacaacttcgatttggttgatcttagaagcaaagacatgg----tgattgattatcaattgagagaatagaacaat 157  Q
    |||||||||||||||||| | ||| ||||| |||||||| |||||| |||||||||    |||||||||||||||| |||||||||||||||    
T  16983133 agaagaggaagataagaagagctttgattttgttgatctgagaagccaagacatggtgattgattgattatcaattcagagaatagaacaat 16983224  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 16553069 - 16553026
Alignment:
Q  279 gttcggtttgattcgaattgttccattatggttcagttcagttc 322  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||    
T  16553069 gttcggtttggttcgaattgtttcattatagttcagttcagttc 16553026  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 40997726 - 40997654
Alignment:
Q  253 gaaacagttcactgttttgaagaccagttcggtttgattcgaattgttccattatggttcagttcagttcaaa 325  Q
    ||||||||||||  |||| ||||||||||| ||||| ||  ||||||| ||||||||| ||||||||||||||    
T  40997726 gaaacagttcacaatttttaagaccagttcagtttggtttaaattgtttcattatggtgcagttcagttcaaa 40997654  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 52421890 - 52421823
Alignment:
Q  254 aaacagttcactgttttgaagaccagttcggtttgattcgaattgttccattatggttcagttcagtt 321  Q
    |||||||| ||| ||||||| |||||||| ||||| ||| || | || ||||||||||||||||||||    
T  52421890 aaacagttaactattttgaaaaccagttcagtttggttcaaactattgcattatggttcagttcagtt 52421823  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 31531943 - 31531895
Alignment:
Q  290 ttcgaattgttccattatggttcag-ttcagttcaaacgaactgaaaaa 337  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||    
T  31531943 ttcgaattgttccattatggttttggttcagttcaaacgaactgaaaaa 31531895  T

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