View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11752_low_9 (Length: 315)
Name: NF11752_low_9
Description: NF11752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11752_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 44833148 - 44833440
Alignment:
| Q |
19 |
gctgcatctgtgccaacaataataaaataaaatgtgacgactcagagaaggtttgtgggattcagtattctgatcagactcaagttgtaacatgtgctat |
118 |
Q |
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| T |
44833148 |
gctgcatctgtgccaacaataataaaataaaatgtgacgactcagagaaggtttgtgggattcagtattctgatcagactcaagttgtaacctgtgctat |
44833247 |
T |
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| Q |
119 |
tcctaatccacctgaatggcctcctctcctgcaacttcccgctctctcatgcaatacaaccgcctcctgttattttaccatgctctttaccgccaacaat |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
44833248 |
tcctaatccacctgaatggcctcctctcttgcaacttcccgctctctcatgcaatacaactgcctcctgttattttaccatgctctttactgccaacaat |
44833347 |
T |
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| Q |
219 |
cactcctttggacaaagtattgcaccnnnnnnngttcaaatttagagtcaacaaaagttgattcttatgtacaagatacttactttgccttat |
311 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44833348 |
cactcctttggacaaagtattgcacctttttttgttcaaatttagagtcaacaaaagttgattcttatgtaccagatacttactttgccttat |
44833440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 44894157 - 44894258
Alignment:
| Q |
56 |
cgactcagagaaggtttgtgggattcagtattctgatcagactcaagttgtaacatgtgctattcctaatccacctgaatggcctcctctcctgcaactt |
155 |
Q |
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|||||| |||||||||||||| | ||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44894157 |
cgactccgagaaggtttgtggtgtcaagtattccgatcagactcaagttttagcctgtgctattcctaatccacctgaatggcctcctctcttgcaactt |
44894256 |
T |
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| Q |
156 |
cc |
157 |
Q |
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|| |
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| T |
44894257 |
cc |
44894258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 44858359 - 44858547
Alignment:
| Q |
50 |
atgtgacgactcagagaaggtttgtgggattcagtattctgatcagactcaagttgtaacatgtgctattcctaatccacctgaatggcctcctctcctg |
149 |
Q |
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|||| |||| || ||||||||||||||| | ||||||||| |||||| |||| || |||||||| || ||||| ||||||||||||||||||||||| || |
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| T |
44858359 |
atgtaacgattcggagaaggtttgtggggtccagtattctaatcagaatcaacttctaacatgtcctgttcctcatccacctgaatggcctcctctcttg |
44858458 |
T |
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| Q |
150 |
caacttcccgctctctcatgcaatacaaccgcctcctgttattttaccatgctctttaccgccaacaatcactcctttggacaaagtat |
238 |
Q |
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| T |
44858459 |
caacttcctactgtgttgtgcaaggaaaatgcttcctgtcgttttaacatgcttttcaccgccgacaatcactcctttgcacagagtat |
44858547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 44845390 - 44845497
Alignment:
| Q |
50 |
atgtgacgactcagagaaggtttgtgggattcagtattctgatcagactcaagttgtaacatgtgctattcctaatccacctgaatggcctcctctcctg |
149 |
Q |
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|||| |||| ||||| ||| |||||||| |||||||||| |||||||||||| | | | | |||||||||||| | |||| |||||||||||||||| | |
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| T |
44845390 |
atgtaacgattcagacaagctttgtggggttcagtattcggatcagactcaaatggcagcctgtgctattcctcagccacatgaatggcctcctctcttt |
44845489 |
T |
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| Q |
150 |
caacttcc |
157 |
Q |
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|||||||| |
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| T |
44845490 |
caacttcc |
44845497 |
T |
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