View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_high_11 (Length: 284)
Name: NF11753_high_11
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 46765582 - 46765323
Alignment:
| Q |
7 |
tgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggaggaaaatatatcttcccttcgttccatcccacaaaagcgcggcctc |
106 |
Q |
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| T |
46765582 |
tgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggaggaaaatatatcttcccttcgttccatcccacaaaagcgcggcctc |
46765483 |
T |
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| Q |
107 |
ttttttgctctattctcaactgccatgagtgtcaatagttaggattattatgtaacttaaacagcaaacatgaggttaatggtaacatgaacgagacata |
206 |
Q |
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| T |
46765482 |
ttttttgctctattctcaactgccatgagtgtcaatagttaggattattatgtaacttaaacagcaaacatgaggttaatggtaacatgaacgagacata |
46765383 |
T |
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| Q |
207 |
cttgatcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaac |
266 |
Q |
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| T |
46765382 |
cttgatcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaac |
46765323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 1085939 - 1085814
Alignment:
| Q |
6 |
atgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggaggaaaatatatcttcccttcgttccatcccacaaaagcgcggcct |
105 |
Q |
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||||||||||||||| | || | ||||||||| |||||||| || || |||||||| ||||| ||||||||||| |||||||| |||| || |||||| |
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| T |
1085939 |
atgcatatcatctccagcatacctatctgaattggttgaatacttatatgttggagggaaataaatcttcccttctttccatcctgcaaatgcacggcct |
1085840 |
T |
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| Q |
106 |
cttttttgctctattctcaactgcca |
131 |
Q |
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| T |
1085839 |
cgcttttgctctattctcaactgcca |
1085814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 1085728 - 1085674
Alignment:
| Q |
212 |
tcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaac |
266 |
Q |
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||||| |||| |||||||||||||||||||||||||| ||| ||||| ||||||| |
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| T |
1085728 |
tcattctctaacaatgctctccagttttgcatctcaataagcgccttcgcagaac |
1085674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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