View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_high_12 (Length: 263)
Name: NF11753_high_12
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_12 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 22422 - 22656
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22422 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
22521 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22522 |
ctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaa |
22621 |
T |
|
| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaat |
247 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||| |
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| T |
22622 |
aatcttgccggaagattcatgaaagaagtccaaat |
22656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 10197666 - 10197432
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197666 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
10197567 |
T |
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| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10197566 |
ctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaa |
10197467 |
T |
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| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaat |
247 |
Q |
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|||||||||||||| |||||||||||||| ||||| |
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| T |
10197466 |
aatcttgccggaagattcatgaaagaagtccaaat |
10197432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 25026158 - 25025924
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
25026158 |
cagaccgattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatctttc |
25026059 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||| | |||||||||||||||| ||||| |||||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||| ||| |
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| T |
25026058 |
ctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctccgacggtatcgtcctcgaa |
25025959 |
T |
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| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaat |
247 |
Q |
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||||| |||||||| |||||||||||||||||||| |
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| T |
25025958 |
aatctcgccggaagattcatgaaagaagttcaaat |
25025924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 19456933 - 19457159
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
19456933 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatctttc |
19457032 |
T |
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| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
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||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||| || |||||||||||||| ||||| ||||| || ||||||||| |
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| T |
19457033 |
ctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaa |
19457132 |
T |
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| Q |
213 |
aatcttgccggaaggttcatgaaagaa |
239 |
Q |
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||||| ||||| || || ||||||||| |
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| T |
19457133 |
aatctcgccggtagatttatgaaagaa |
19457159 |
T |
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