View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11753_high_13 (Length: 256)
Name: NF11753_high_13
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_13 |
 | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0149 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30943 - 30872
Alignment:
| Q |
1 |
cgataagggtttcaaagaaacagtttcaaaccgaacgtcggcccaacaacgatttactaatgaaatcccaac |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
30943 |
cgataagggtttcaaagaaacagtttcaaaccgaacctcggcccaacaaagatttactaatgaaatcccaac |
30872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 38331930 - 38331873
Alignment:
| Q |
105 |
aaggtaacatgtgaacttgaccgcacaagaatacgaccttaacatgatattggatgtt |
162 |
Q |
| |
|
||||| || |||| |||||||| ||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
38331930 |
aaggtcacttgtgcacttgaccacacaaaaataccaccttaagatgatattggatgtt |
38331873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University