View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_high_14 (Length: 252)
Name: NF11753_high_14
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 10493998 - 10494229
Alignment:
| Q |
12 |
agcatagggaatgtgacgta----tgacacaaaatagaaataatagctcaactttgcttcactatcctagat-gtca-tagtggctttcttgctatctac |
105 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
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| T |
10493998 |
agcatagggaatgtgacgtaggtatgacacaaaatagaaataatagctcaactttgcttcactatcctagattgacaatagtggctttcttgctatctac |
10494097 |
T |
|
| Q |
106 |
tataccgctatagcatttttggggttcggcgctacatgccgcttgctatctaggattagcaacataatagtcatctataatgacctcaaatccattaatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10494098 |
tataccgctatagcatttttggggttcggcgctacatgccgcttgctatctaggattaacaacataatagtcatctataatgacctcaaatccattaatc |
10494197 |
T |
|
| Q |
206 |
taagtaagtttacctgatctacaacttcccac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
10494198 |
taagtaagtttacctgatctacaacttcccac |
10494229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 10489954 - 10490158
Alignment:
| Q |
36 |
acaaaatagaaataatagctcaactttgcttcactatcctagat-gtca-tagtggctttcttgctatctactataccgctatagcatttttggggttcg |
133 |
Q |
| |
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|||||||||||| || ||||||||| |||| ||||||||||||| | || |||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
10489954 |
acaaaatagaaacaacagctcaactctgctccactatcctagattgacaatagtggctttctcgctatctactataccgctatagcatttttgaagttcg |
10490053 |
T |
|
| Q |
134 |
gcgctacatgccgcttgctatctaggattagcaacataatagtcatctataatgacctcaaatccattaat-ctaagtaagtttacctgatctacaactt |
232 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| || |||||||| |
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| T |
10490054 |
gcgctacaggccgcttgctatctgggattaataacataataatcatctatgatgacctccaatccattaatcctaagtaagtttacccgaattacaactt |
10490153 |
T |
|
| Q |
233 |
cccac |
237 |
Q |
| |
|
|||| |
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|
| T |
10490154 |
gccac |
10490158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 7477572 - 7477425
Alignment:
| Q |
18 |
gggaatgtgacgtatgacacaaaatagaaataatagctcaactttgcttcactatcctagat-gtca-tagtggctttcttgctatctactataccgcta |
115 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||| | |
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| T |
7477572 |
gggaaagtgacgtacgacacaaaatagaaacaatagctcaactttgctccactatcctagattgacaatagtggctttcttgctatctactataccgcaa |
7477473 |
T |
|
| Q |
116 |
tagcatttttggggttcggcgctacatgccgcttgctatctaggatta |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7477472 |
tagcatttttggggttcggcgctacatgccgtttgctatctaggatta |
7477425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 10464589 - 10464632
Alignment:
| Q |
194 |
aatccattaatctaagtaagtttacctgatctacaacttcccac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
10464589 |
aatccattaatctaagtaagtttacctgattcacaacttcccac |
10464632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 1094624 - 1094513
Alignment:
| Q |
126 |
ggggttcggcgctacatgccgcttgctatctaggattagcaacataatagtcatctataatgacctcaaatccattaatctaagtaagtttacctgatct |
225 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| | ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1094624 |
ggggttcggcgctacatgccgcttactatcttggataaaaaacataagaatcatctataatgacctcaaatccattaatctaattaagtttacctgatct |
1094525 |
T |
|
| Q |
226 |
acaacttcccac |
237 |
Q |
| |
|
|||||||||||| |
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|
| T |
1094524 |
acaacttcccac |
1094513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 19189963 - 19189998
Alignment:
| Q |
105 |
ctataccgctatagcatttttggggttcggcgctac |
140 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
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|
| T |
19189963 |
ctataccgctatagcatttttggggtttggcgctac |
19189998 |
T |
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