View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11753_high_20 (Length: 222)
Name: NF11753_high_20
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 10495057 - 10494865
Alignment:
| Q |
20 |
aaaaatcagtcatggcggaatcttttcaatcagaatcagggaggtcgacgcaatgttcgaatgaactggatgtctaatcccatttcccattctatccctg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10495057 |
aaaaatcagtcatggcggaatcttttcaatcagaatcagggaggtcgacaccatgttcgaatgaactggatgtctaatcccatttcccattctatccctg |
10494958 |
T |
|
| Q |
120 |
cagatatcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttcctttcctgcattaattcacattttctctgcttct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
10494957 |
cagatatcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttcttttcctgcattagttcacattttctctgcttct |
10494865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 7476237 - 7476285
Alignment:
| Q |
156 |
tactaatttaatcatacactttcctttcctgcattaattcacattttct |
204 |
Q |
| |
|
||||||||||||| || | |||||||| |||||||| |||||||||||| |
|
|
| T |
7476237 |
tactaatttaatcttagagtttccttttctgcattatttcacattttct |
7476285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University