View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11753_high_4 (Length: 451)
Name: NF11753_high_4
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 8926500 - 8926928
Alignment:
| Q |
8 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926500 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
8926599 |
T |
|
| Q |
108 |
ccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaattcatatacaccatcagcgtnnnnnnnnttac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8926600 |
ccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaattcatatacactgtcagcgtaaaaaaaattac |
8926699 |
T |
|
| Q |
208 |
tattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtgaatttcaggaagacaatgaaggaatttgcag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926700 |
tattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtgaatttcaggaagacaatgaaggaatttgcag |
8926799 |
T |
|
| Q |
308 |
agaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagtgttttatggatcaaaggg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926800 |
agaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttggacttgagaaagggtacttgaagaaagtgttttatggatcaaaggg |
8926899 |
T |
|
| Q |
408 |
tccaaattttggtacaaaagttagtaact |
436 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8926900 |
tccaaattttggtacaaaagttagtaact |
8926928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 55523247 - 55523373
Alignment:
| Q |
8 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
107 |
Q |
| |
|
|||||||||||| |||| || |||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||| | ||| || ||||||||| |
|
|
| T |
55523247 |
aagcaaaggtttagagtttgctcagtctgaaattaatgacttggattgggaaagcactttctttttgcgccaccttcctaactttaacatatcagagatc |
55523346 |
T |
|
| Q |
108 |
ccagatcttgatgaagattacaggtca |
134 |
Q |
| |
|
|| ||||||||| | || ||||||||| |
|
|
| T |
55523347 |
cctgatcttgatcatgactacaggtca |
55523373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 277 - 419
Target Start/End: Original strand, 55523582 - 55523724
Alignment:
| Q |
277 |
aatttcaggaagacaatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggt |
376 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| | || | ||||| ||||| ||| |||||||||||| ||||||||||||||| || |||||||| | |
|
|
| T |
55523582 |
aattttaggaagataatgaaggaatttgcagtggaacttgagaacctggctgagctacttcttgactttctgtgtgagaatcttgggctagagaaaggtt |
55523681 |
T |
|
| Q |
377 |
acttgaagaaagtgttttatggatcaaagggtccaaattttgg |
419 |
Q |
| |
|
| ||||||||||| ||| ||||||| ||||| ||||||||||| |
|
|
| T |
55523682 |
atttgaagaaagtctttcatggatccaagggaccaaattttgg |
55523724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University