View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_high_7 (Length: 391)
Name: NF11753_high_7
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 25 - 381
Target Start/End: Complemental strand, 53639864 - 53639510
Alignment:
| Q |
25 |
agctattacattgaatcacaaaagagtgtgtgtgatgtctaaaaagtttaacctctattgccacccaattcctgattcatttagatttataatttattca |
124 |
Q |
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| T |
53639864 |
agctattacattgaatcacaaaagagtgtgtgtgatgtctaaaaagtttaacctctattgccacccaat-cctgattcatttagatttataatttattca |
53639766 |
T |
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| Q |
125 |
cacttttaattaaacagaaaagcaaaggatattttgtatt-ttttgacgtccaagatagaagtccagtcttcttaatnnnnnnnnnnnnngtccagtcaa |
223 |
Q |
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| T |
53639765 |
cacttttaattaaacagaaaagcaaaggatattttgtattattttgacgtccaagatagaagtccagtcttct--attaaaaaaaaaaaagtccagtcaa |
53639668 |
T |
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| Q |
224 |
aaaatgactctaagccgcctgtggtgttattattcaaaaaatgattgagagtagttttacaaaatccacacacagtattgacttttttatgtgagttaaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53639667 |
aaaatgactctaagccgcctgtggtgttattattcaaaaaatgattgagagtagttttacaaaatccacacacagtattgacttttttatgtgagttaaa |
53639568 |
T |
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| Q |
324 |
tattacagactatatccattatatagtattggtaaaaagatgatcattaatgtctctg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53639567 |
tattacagactatatccattatatagtattggtaaaaagatgatcattaatgtgtctg |
53639510 |
T |
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