View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_low_1 (Length: 821)
Name: NF11753_low_1
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 259 - 806
Target Start/End: Original strand, 35609967 - 35610515
Alignment:
| Q |
259 |
ggggagtgtatagattgcaaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttgg-ttgcctagatatgggaacactagattc |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35609967 |
ggggagtgtatagattgcaaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttgggttgcctagaaatgggaacactagattc |
35610066 |
T |
|
| Q |
358 |
actgacctaaatggagagatcatatatcatttcatgtttatttcaagtttcagtgagtatactgtggttgacattgccaatgtactaaagattgatccac |
457 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35610067 |
actgacctaaacggagagatcatatatcatttcatgtttatttcaagtttcagtgagtataccgtggttgacattgccaatgtactaaagattgatccac |
35610166 |
T |
|
| Q |
458 |
aaatccctcctgatagggcctgccttctcggttgtggtggatcgacaggtagtttctttatcaacgcaaaaagtaaatttagagtatagataagaacaat |
557 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35610167 |
aaatccctcctcatagggcctgccttctcggttgtggtgtatcgacaggtagtttctttatcaacgcaaaaagtaaatttagaatatagataagaacaat |
35610266 |
T |
|
| Q |
558 |
gatggtggtcaattagggtcaaattaattggtcgtgaataaaagagagattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatc |
657 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35610267 |
gatgatggtcaattagggtcaacttaattggtcgtgaataaaagaaatattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatc |
35610366 |
T |
|
| Q |
658 |
ttatttaatagttaaaacttgtatttgtaggggtaggggctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctcggatc |
757 |
Q |
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| T |
35610367 |
ttatttaatagttaaaacttgtatttgtaggggtaggtgctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctaggatc |
35610466 |
T |
|
| Q |
758 |
tgttggattagcagtatggattctctaaaactcagatttgccttctgtg |
806 |
Q |
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| T |
35610467 |
tgttggattagcagtatgggctctctaaaactcagatttgccttctgtg |
35610515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 155 - 467
Target Start/End: Original strand, 35614351 - 35614664
Alignment:
| Q |
155 |
tttcaaccaattttt-tgtgatgtagggttgtggaaagtgtagggaaggatgtaactgaagtaacaaaaggagatatggttattccaattttcctaccag |
253 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
35614351 |
tttcaatcaatttttatgtgacatagggttgtggaaagtgttgggaagaatgtaactgaagttacaaaaggagatgtggttattccaatttttctaccag |
35614450 |
T |
|
| Q |
254 |
attgtggggagtgtatagattgcaaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttggttgcctagatatgggaacactag |
353 |
Q |
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| T |
35614451 |
attgtggagagtgtatagattgcaaatcaaccaagagcaacctttgtactaatttcccgttcaaagtttctccttggatgcctagacatgagaacaccag |
35614550 |
T |
|
| Q |
354 |
attcactgacctaaatggagagatcatatatcatttcatgtttatttcaagtttcagtgagtatactgtggttgaca-ttgccaatgtactaaagattga |
452 |
Q |
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|||||| |||||||| |||||||||||| |||||||||||| | ||||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||| |
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| T |
35614551 |
attcacagacctaaacggagagatcatacatcatttcatgtatgtttcaagtttcagcgagtacactgtgg-tgacatttgccaatgtaacaaagattga |
35614649 |
T |
|
| Q |
453 |
tccacaaatccctcc |
467 |
Q |
| |
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||| |||| ||||| |
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| T |
35614650 |
cccagaaattcctcc |
35614664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 35609785 - 35609969
Alignment:
| Q |
17 |
agattctatgattaaatatttattcatttttcttgttgtgt--gggttgaataatttgctgctttgtgcatccattggcattaagttcttctacatactc |
114 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35609785 |
agattctatgactaaatatttattcatttttcttgttttgtttgggttgaataatttgctgctttgtgcatccattggcattaagttcttctacatactc |
35609884 |
T |
|
| Q |
115 |
aaacattgaagatccc-tgggaacataatgaagcgtttctttttcaaccaattttttgtgatgtagggttgtggaaagtgtaggg |
198 |
Q |
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| T |
35609885 |
aaacattgaagatcccttgggaacataatgaagcatttctttttcaaccaattttttgtgatgtagggttgtggaaagtgtaggg |
35609969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 574 - 773
Target Start/End: Original strand, 35614772 - 35614965
Alignment:
| Q |
574 |
ggtcaaattaattggtcgtgaataaaagagagattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaa |
673 |
Q |
| |
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|||||||| ||||| || ||||||||||| || |||||| || || |||| ||| | || ||| |||||||||||||||||||| || | ||| |
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| T |
35614772 |
ggtcaaatgaattgatcatgaataaaagaaaggttgcttctattacaagtcaacaatattcatctgattcaatgttttgaaatctt------tattcaaa |
35614865 |
T |
|
| Q |
674 |
acttgtatttgtaggggtaggggctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctcggatctgttggattagcagta |
773 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| || |||||| |||||||||||||| |
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| T |
35614866 |
acttccatttgtaggggtaggtgctgcttggagaacagcaggtgtggagccagggtctacagtagctatttttggactaggatctattggattagcagta |
35614965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 165 - 508
Target Start/End: Complemental strand, 38029245 - 38028902
Alignment:
| Q |
165 |
ttttttgtgatgtagggttgtggaaagtgtagggaaggatgtaactgaagtaacaaaaggagatatggttattccaattttcctaccagattgtggggag |
264 |
Q |
| |
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|||| |||||| ||||||||||||||||| || ||| ||||| ||||| ||||||||||| || ||||| ||||| ||| | | ||||||| ||| |
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| T |
38029245 |
ttttatgtgattcagggttgtggaaagtgttggagagggagtaacagaagttacaaaaggagacattgttatcccaatcttcatggctgattgtgaagag |
38029146 |
T |
|
| Q |
265 |
tgtatagattgcaaatcaaccaagagcaaccgttgtactaatttcccattcaaagtttctccttggttgcctagatatgggaacactagattcactgacc |
364 |
Q |
| |
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|| ||||||||||||||||| |||||||||| |||| | || || || || | ||| |||||| ||| |||||||| | ||| ||||||||| | | |
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| T |
38029145 |
tgcatagattgcaaatcaacaaagagcaacctttgttcaaagtttccttttgatgttaaaccttggatgcttagatatgataccaccagattcactaatc |
38029046 |
T |
|
| Q |
365 |
taaatggagagatcatatatcatttcatgtttatttcaagtttcagtgagtatactgtggttgacattgccaatgtactaaagattgatccacaaatccc |
464 |
Q |
| |
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||||||||||||| ||| | |||||||| ||| | || ||||| || ||||| ||||||||||||| ||||||| |||| |||||||||||| ||| || |
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| T |
38029045 |
taaatggagagattataaaccatttcatatttgtctcgagttttagcgagtacactgtggttgacactgccaatctactcaagattgatccagcaattcc |
38028946 |
T |
|
| Q |
465 |
tcctgatagggcctgccttctcggttgtggtggatcgacaggta |
508 |
Q |
| |
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||| | ||||| ||||| ||| ||||||||| ||| ||||||| |
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| T |
38028945 |
tcccaacagggcatgcctcctcagttgtggtgtatcaacaggta |
38028902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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