View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11753_low_10 (Length: 284)

Name: NF11753_low_10
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11753_low_10
NF11753_low_10
[»] chr5 (8 HSPs)
chr5 (10-280)||(16791139-16791409)
chr5 (31-221)||(37390188-37390378)
chr5 (61-187)||(19903507-19903633)
chr5 (105-268)||(18325361-18325526)
chr5 (136-195)||(24492434-24492493)
chr5 (168-216)||(28623525-28623574)
chr5 (151-195)||(26013780-26013824)
chr5 (148-208)||(27499858-27499918)
[»] chr1 (11 HSPs)
chr1 (10-271)||(35895992-35896253)
chr1 (60-239)||(19960225-19960402)
chr1 (37-224)||(29076819-29077006)
chr1 (74-187)||(20619698-20619811)
chr1 (111-238)||(1616307-1616434)
chr1 (62-197)||(11105295-11105428)
chr1 (37-142)||(43282499-43282604)
chr1 (145-212)||(26898107-26898174)
chr1 (135-193)||(37283329-37283387)
chr1 (151-195)||(12893277-12893321)
chr1 (151-195)||(30805843-30805887)
[»] chr4 (10 HSPs)
chr4 (38-241)||(12236166-12236369)
chr4 (60-248)||(13977251-13977442)
chr4 (50-215)||(23865967-23866132)
chr4 (43-234)||(12606456-12606647)
chr4 (37-208)||(12191061-12191231)
chr4 (145-205)||(11419762-11419822)
chr4 (30-94)||(27940822-27940885)
chr4 (40-108)||(15736616-15736684)
chr4 (145-212)||(11545261-11545328)
chr4 (151-200)||(19053268-19053317)
[»] scaffold1190 (1 HSPs)
scaffold1190 (62-240)||(1225-1403)
[»] chr8 (7 HSPs)
chr8 (37-187)||(33925528-33925678)
chr8 (111-248)||(29092888-29093023)
chr8 (30-195)||(34062336-34062500)
chr8 (32-267)||(17872291-17872526)
chr8 (62-187)||(6589405-6589530)
chr8 (60-142)||(12012421-12012503)
chr8 (104-224)||(29231780-29231899)
[»] scaffold0514 (1 HSPs)
scaffold0514 (37-240)||(7174-7377)
[»] scaffold0217 (1 HSPs)
scaffold0217 (46-170)||(6909-7033)
[»] chr3 (7 HSPs)
chr3 (30-271)||(42250654-42250897)
chr3 (30-229)||(4508065-4508263)
chr3 (30-93)||(5798272-5798335)
chr3 (135-195)||(27485958-27486018)
chr3 (40-179)||(31779578-31779717)
chr3 (145-195)||(13291691-13291741)
chr3 (175-240)||(20648802-20648870)
[»] chr7 (6 HSPs)
chr7 (150-271)||(24141239-24141360)
chr7 (63-239)||(28981163-28981335)
chr7 (60-155)||(11609157-11609252)
chr7 (60-221)||(1767492-1767654)
chr7 (145-195)||(1777074-1777124)
chr7 (145-187)||(27707332-27707374)
[»] chr6 (3 HSPs)
chr6 (54-284)||(19691834-19692066)
chr6 (31-141)||(15586471-15586581)
chr6 (145-205)||(10814777-10814837)
[»] scaffold0329 (1 HSPs)
scaffold0329 (40-212)||(4268-4438)
[»] chr2 (7 HSPs)
chr2 (31-172)||(18038283-18038425)
chr2 (31-240)||(13112357-13112566)
chr2 (145-205)||(16587088-16587148)
chr2 (30-118)||(26704489-26704577)
chr2 (146-195)||(27765607-27765656)
chr2 (145-216)||(25563987-25564059)
chr2 (154-195)||(29409678-29409719)
[»] scaffold0040 (1 HSPs)
scaffold0040 (10-75)||(7944-8008)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 16791139 - 16791409
Alignment:
Q  10 gaggtgccaacatatcactatgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattc 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16791139 gaggtgccaacatatcactatgagtcgttgagaatcatgatcataaacaatggaatgtttcttgatttggttaatgtcgttgaaaagatatttaaaattc 16791238  T
Q  110 ctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgag 209  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||  |||||||||||||||||| ||    
T  16791239 ctttgcttcaaaagaaattgtatgtttcattccaattgtccttgaagttcattgtccgtttctacacatggtcagaaaaagacaaactatattatctaag 16791338  T
Q  210 tctgataatgaccttttcagaagatgacaaaaatagtcatagacttttgatgctgacgtggcttctagagc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  16791339 tctgataatgaccttttcagaagatgacaaaaatagtcatagttttttgatgctgacgtggcttctagagc 16791409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 37390188 - 37390378
Alignment:
Q  31 gagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattat 130  Q
    ||||| ||||||| |||||||||||||  |||||||||||| |||| ||||||| || ||||||||| |||| |||||||||||||| ||||| ||||||    
T  37390188 gagtctttgagaagcttgatcatagacgttggaatgtttctcgattcggttaatatcgttgaaaagacatttgaaattcctttgcttgaaaaggaattat 37390287  T
Q  131 atgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgac 221  Q
     ||||||||||||||| || ||||||||| |||| ||||||| || ||||||||||| ||| ||| | || ||||  ||||||||| ||||    
T  37390288 ctgtttcattccaattatccttgaagttctttgtttgtttctgcatgtggtcagaagaagataaaatgtactatcaaagtctgatagtgac 37390378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 19903507 - 19903633
Alignment:
Q  61 ggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttca 160  Q
    ||||||||| ||||||||||||||||||||||||    |||| |||||||||||||||||  |||||||||||||||||| |  ||||| || ||||||     
T  19903507 ggaatgtttattgatttggttaatgtcattgaaagttcatttgaaattcctttgcttcaattgaaattatatgtttcattgcctttgtccttaaagttct 19903606  T
Q  161 ttgtctgtttctacacgtggtcagaag 187  Q
    |||| | ||||  ||||||||||||||    
T  19903607 ttgtttatttcagcacgtggtcagaag 19903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 268
Target Start/End: Complemental strand, 18325526 - 18325361
Alignment:
Q  105 aattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattat 204  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||  |||||||| |||| ||||||| ||| ||| |||| | ||| ||| | ||  ||    
T  18325526 aattcctttgcttcaaaaggaattatgtgtttcattccaattgtccctgaagttctttgtttgtttcttcacatggccagacgaagataaattgtaccat 18325427  T
Q  205 ctgagtctgataatgacctt--ttcagaagatgacaaaaatagtcatagacttttgatgctgacgt 268  Q
    | ||||||||||   |||||  |||| |||||||||||| |  |||||| ||| | ||||||||||    
T  18325426 cagagtctgatagcaaccttccttcaaaagatgacaaaattgatcatagtcttctaatgctgacgt 18325361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 24492493 - 24492434
Alignment:
Q  136 tcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    |||||| | ||||| || |||||| ||||||||||||||||||||| ||||| |||||||    
T  24492493 tcattctatttgtcctttaagttctttgtctgtttctacacgtggttagaagaagacaaa 24492434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 28623525 - 28623574
Alignment:
Q  168 tttctacacgtggtcagaagcagacaaactatatta-tctgagtctgata 216  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||||||    
T  28623525 tttctgcacgtggtcagaagaagacaaactatattattcagagtctgata 28623574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 26013780 - 26013824
Alignment:
Q  151 ttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    ||||||||| |||| ||||||||||| |||||||||| |||||||    
T  26013780 ttgaagttctttgtttgtttctacacatggtcagaagaagacaaa 26013824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 27499858 - 27499918
Alignment:
Q  148 tctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctga 208  Q
    |||||||||||  ||||||||||||||||||||||| |||  |||||| | || |||||||    
T  27499858 tctttgaagttatttgtctgtttctacacgtggtcaaaagatgacaaattgtactatctga 27499918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 35895992 - 35896253
Alignment:
Q  10 gaggtgccaacatatcactatgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattc 109  Q
    |||||||||||| || ||| |||||| ||||||  |||| ||||||||  |||||||||| ||||||||||||||||| ||||||||| |||| ||||||    
T  35895992 gaggtgccaacacattactttgagtcattgagaggcttggtcatagacgttggaatgttttttgatttggttaatgtctttgaaaagaaatttgaaattc 35896091  T
Q  110 ctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgag 209  Q
     ||||||||||||| ||||||   ||||||||| ||| || || |||||| || | ||||||| || ||||| |||||  || ||||| || ||||||||    
T  35896092 atttgcttcaaaaggaattatccatttcattccgattttccttaaagttctttatttgtttctgcatgtggttagaagaggataaactgtactatctgag 35896191  T
Q  210 tctgataatgaccttttcagaagatgacaaaaatagtcatagacttttgatgctgacgtggc 271  Q
    |||||||||||| | ||| ||||||||||||||| |||| || ||| |||||||| ||||||    
T  35896192 tctgataatgacatcttctgaagatgacaaaaatggtcagagtcttctgatgctgccgtggc 35896253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 19960402 - 19960225
Alignment:
Q  60 tggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttc 159  Q
    ||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||  |||||| || |||||||||||||||||||||||||    
T  19960402 tggaatgtttcatgatttggttaatgtcgttgaaaagacatttgaaattcctttgcttcaaaaagaattatttg-ttcattccaattgtctttgaagttc 19960304  T
Q  160 attgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagatgacaa 239  Q
     |||| ||||| | |||||||||||||| ||||||| | ||  |||||||||||||  |||| | ||||||||| |||||    
T  19960303 -ttgtatgtttttgcacgtggtcagaagaagacaaagtgtaccatctgagtctgatggtgacatcttcagaagacgacaa 19960225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 29077006 - 29076819
Alignment:
Q  37 ttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgttt 136  Q
    ||||||| |||||||| ||||  ||||||||||||||||||||||||||   |||||| |  |||| |||||| ||||||||||| ||||||||  ||||    
T  29077006 ttgagaaacttgatcaaagacgttggaatgtttcttgatttggttaatgatgttgaaatgtcatttgaaattcatttgcttcaaatgaaattattcgttt 29076907  T
Q  137 cattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgacctt 224  Q
    |||| || ||||| ||||| |   |||| ||||||| |||||| | ||||| ||| ||| |||| |||| ||||||||||||||||||    
T  29076906 catttcatttgtccttgaattgttttgtttgtttctgcacgtgtttagaagaagataaattatactatcagagtctgataatgacctt 29076819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 20619698 - 20619811
Alignment:
Q  74 atttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttcta 173  Q
    ||||||||||||||||||||| |  |||| |||||| |||  ||||||  ||||||| ||||| ||| |||||||||||||||||| |||| |||||||     
T  20619698 atttggttaatgtcattgaaaggtcattttaaattcatttttttcaaattaaattatctgttttatttcaattgtctttgaagttctttgtttgtttctg 20619797  T
Q  174 cacgtggtcagaag 187  Q
    ||||| ||||||||    
T  20619798 cacgtagtcagaag 20619811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 1616434 - 1616307
Alignment:
Q  111 tttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagt 210  Q
    |||| |||||| ||||||||||| |||||| |||||||| ||||| ||| |||| ||||| | ||| ||||||||||  |  ||||| |  |||||||||    
T  1616434 tttgtttcaaaggaaattatatgcttcatttcaattgtccttgaaattctttgtttgtttgtgcacatggtcagaagagggtaaactgtgctatctgagt 1616335  T
Q  211 ctgataatgaccttttcagaagatgaca 238  Q
    |||||| |||||| ||||||||||||||    
T  1616334 ctgatagtgacctcttcagaagatgaca 1616307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 11105295 - 11105428
Alignment:
Q  62 gaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcat 161  Q
    |||||||||||||| |||||||| ||||||||| |  |||| ||| |||||| | ||||  | ||||||||||||| ||||  || || ||||||||  |    
T  11105295 gaatgtttcttgatctggttaatatcattgaaaggtcattttaaactccttttcatcaattggaattatatgtttcgttccctttatccttgaagtt--t 11105392  T
Q  162 tgtctgtttctacacgtggtcagaagcagacaaact 197  Q
    | | |||||||||||||| | ||||| |||||||||    
T  11105393 tatttgtttctacacgtgattagaagaagacaaact 11105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 43282604 - 43282499
Alignment:
Q  37 ttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgttt 136  Q
    ||||||| |||||||||||||  || ||||||  ||||||||||||| ||| |||||   | |||| ||||||||||||| |||| | |||||| | |||    
T  43282604 ttgagaagcttgatcatagacgttgaaatgttctttgatttggttaacgtcgttgaaggcacatttgaaattcctttgctgcaaatggaattatcttttt 43282505  T
Q  137 cattcc 142  Q
    ||||||    
T  43282504 cattcc 43282499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 26898107 - 26898174
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtct 212  Q
    ||||| ||| ||||| |||| |||||||||||||||||||||| ||||||| | || |||| ||||||    
T  26898107 ttgtccttgcagttctttgtatgtttctacacgtggtcagaagaagacaaattgtactatcagagtct 26898174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 37283387 - 37283329
Alignment:
Q  135 ttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagaca 193  Q
    |||||||  |||| |||||||||   ||||||||||||||||||||||||||| |||||    
T  37283387 ttcattcttattgcctttgaagtcatttgtctgtttctacacgtggtcagaagaagaca 37283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 12893321 - 12893277
Alignment:
Q  151 ttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    ||||||||| |||| |||||||||||||||| ||||| |||||||    
T  12893321 ttgaagttctttgtttgtttctacacgtggttagaagaagacaaa 12893277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 30805887 - 30805843
Alignment:
Q  151 ttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    ||||||||| |||| ||||||||||||||| |||||| |||||||    
T  30805887 ttgaagttctttgtttgtttctacacgtggccagaagaagacaaa 30805843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 12236166 - 12236369
Alignment:
Q  38 tgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttc 137  Q
    |||||| |||||||||||||  |  |||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||  |||||    
T  12236166 tgagaagcttgatcatagacgttcaaatgtttcttgagttggttaatgtcgttgaaaagacatttaaaattcttttgcttcaaaaggaattatccgtttc 12236265  T
Q  138 attccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagatgac 237  Q
    ||| |||||||| ||||||||| | || ||||||| ||| || |||||||  |||||||| |||||||| |||||||||| ||||| |||| || |||||    
T  12236266 atttcaattgtccttgaagttcttcgtatgtttcttcacatgatcagaagaggacaaactgtattatctaagtctgataacgacctcttcaaaatatgac 12236365  T
Q  238 aaaa 241  Q
    ||||    
T  12236366 aaaa 12236369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 13977442 - 13977251
Alignment:
Q  60 tggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttc 159  Q
    |||||||||||||||| |||||| | || |||||| |  |||| |||||||||||||||||||  |||||| ||||| |||| |||||||||||||||||    
T  13977442 tggaatgtttcttgatatggttattatcgttgaaaggtcatttgaaattcctttgcttcaaaaagaattatttgtttaattctaattgtctttgaagttc 13977343  T
Q  160 attgtctgtttctacacgtggtcagaagcagacaaactata-ttatctgagtctgataatgacctt--ttcagaagatgacaaaaatagtca 248  Q
     |||| ||||||| ||||| |||||||| || |||||| || ||||| ||||||||||  ||||||  ||||||||| ||||||| ||||||    
T  13977342 tttgtttgtttctgcacgtagtcagaagaaggcaaactgtacttatcagagtctgatagcgaccttccttcagaagaagacaaaactagtca 13977251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 23865967 - 23866132
Alignment:
Q  50 tcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtc 149  Q
    ||||||||  |||||||||||||||| || |||||||| ||  || |  ||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  23865967 tcatagacggtggaatgtttcttgatatgattaatgtcgtttgaatgtcatttaaaattcctttgcttcaaaaggaattattcgtttcattccaattgtc 23866066  T
Q  150 tttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgat 215  Q
     ||||||||| |||| ||||| | ||| || |||||||  |||||||| || ||||||||||||||    
T  23866067 cttgaagttctttgtttgtttatgcacatgatcagaagaggacaaactgtactatctgagtctgat 23866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 12606456 - 12606647
Alignment:
Q  43 atcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattcc 142  Q
    |||||||||||||||  ||||||||||||||||||| |||||||  ||||||||| |||| |||||| ||| ||| ||||  |||||| ||||||||| |    
T  12606456 atcttgatcatagacgttggaatgtttcttgatttgattaatgttgttgaaaagacatttcaaattctttttcttaaaaaagaattatttgtttcatttc 12606555  T
Q  143 aattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagat 234  Q
    ||||||| |||||| |  || ||| ||||| |||||||||||||   || | ||| |||||| ||||||||||| ||| || ||||||||||    
T  12606556 aattgtccttgaagatatttatctatttctgcacgtggtcagaaaaggagacactgtattatttgagtctgatagtgatctcttcagaagat 12606647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 12191061 - 12191231
Alignment:
Q  37 ttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgttt 136  Q
    ||||||| |||||||||  ||  |||||| ||||||||||||||||||||  ||| || || |||| |||||||||||||||||||| |||||| || ||    
T  12191061 ttgagaagcttgatcatgaacgttggaatatttcttgatttggttaatgttgttggaacgacatttgaaattcctttgcttcaaaaggaattatctg-tt 12191159  T
Q  137 cattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctga 208  Q
    || |||||||||||||||||||| || ||||||||| ||| |||| | ||| ||||||| | || |||||||    
T  12191160 caatccaattgtctttgaagttctttttctgtttctgcacatggttacaagaagacaaagtgtactatctga 12191231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 11419762 - 11419822
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatc 205  Q
    ||||| ||||||||| |||| |||||||||||||||||||||| ||| ||||| |||||||    
T  11419762 ttgtccttgaagttctttgtttgtttctacacgtggtcagaagaagaaaaactgtattatc 11419822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 27940822 - 27940885
Alignment:
Q  30 tgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaa 94  Q
    |||||| ||||||| |||||||| ||||| || ||||||||||||||||||||||||| ||||||    
T  27940822 tgagtcattgagaagcttgatcagagacattg-aatgtttcttgatttggttaatgtcgttgaaa 27940885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 15736616 - 15736684
Alignment:
Q  40 agaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaatt 108  Q
    |||| |||||||||||||| ||||||||| ||| ||||||||||||  || ||||||| |||| |||||    
T  15736616 agaaacttgatcatagacattggaatgttcctttatttggttaatgaaatcgaaaagacatttgaaatt 15736684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 11545261 - 11545328
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtct 212  Q
    ||||| ||||||||  |||| ||||||||||| |||||||||| ||||||| | ||||||| ||||||    
T  11545261 ttgtccttgaagttttttgtttgtttctacacatggtcagaagaagacaaattgtattatcagagtct 11545328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 19053268 - 19053317
Alignment:
Q  151 ttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactata 200  Q
    ||||||||| |||| ||||||| |||||||||||||| ||| ||||||||    
T  19053268 ttgaagttctttgtttgtttctgcacgtggtcagaagaagataaactata 19053317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 1225 - 1403
Alignment:
Q  62 gaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcat 161  Q
    |||||||||||||||||| |||| || |||||| |  ||| ||||||||||||||||||| ||||||||  | ||||||||||||||| ||||||||| |    
T  1225 gaatgtttcttgatttggataatatcgttgaaaggtcattcaaaattcctttgcttcaaatgaaattattcgattcattccaattgtccttgaagttctt 1324  T
Q  162 tgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagatgacaaa 240  Q
    ||| ||||||| ||||||||||||||  |||||||| |||||||  |  |||||||||| ||||| |||||||||||||    
T  1325 tgtttgtttctgcacgtggtcagaagaggacaaactgtattatccaaaactgataatgagctttttagaagatgacaaa 1403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 33925678 - 33925528
Alignment:
Q  37 ttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgttt 136  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||  ||||||   |||    
T  33925678 ttgagaagcttgatcatagacattagaatgtttcttgatttggttaatgtcgttgaaaagatatttgaaatttctttgcttcaaaatgaattatccattt 33925579  T
Q  137 cattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaag 187  Q
    |||| || ||||||||||||||| |||| |||| || ||||||||||||||    
T  33925578 catttcatttgtctttgaagttctttgtttgttcctgcacgtggtcagaag 33925528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 29093023 - 29092888
Alignment:
Q  111 tttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagt 210  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||| | || ||||||| ||| ||| ||||||  ||||||||||||||| |||||    
T  29093023 tttgcttcaaaaggaattatctgtttcattccaattgtctt-gaagttcttcgt-tgtttctgcacatggccagaagaggacaaactatattatttgagt 29092926  T
Q  211 ctgataatgaccttttcagaagatgacaaaaatagtca 248  Q
    |||||| |||||| ||||||||||||||||| ||||||    
T  29092925 ctgatagtgacctcttcagaagatgacaaaactagtca 29092888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 34062500 - 34062336
Alignment:
Q  30 tgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaatta 129  Q
    |||||| ||||||| |||  ||| ||||| | |||||||||||||||||||||||||| || ||| |  |||| |||||  ||||||||||||||| |||    
T  34062500 tgagtccttgagaaacttcgtcaaagacatttgaatgtttcttgatttggttaatgtctttaaaaggtcatttgaaatttatttgcttcaaaagaa-tta 34062402  T
Q  130 tatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    | ||||||||||||| || ||||||||||| |||| ||||||| |||||||||| ||| |||||||    
T  34062401 tttgtttcattccaactgcctttgaagttctttgtttgtttctgcacgtggtcacaagaagacaaa 34062336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 17872526 - 17872291
Alignment:
Q  32 agtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattata 131  Q
    |||||||||||| ||||| |||||||  |||  |||||||| ||||||||||||||||||||     |||| ||||| |||||||||| | | |||||||    
T  17872526 agtcgttgagaaacttgaccatagacgttggtgtgtttcttaatttggttaatgtcattgaactctcatttgaaatttctttgcttcatacggaattata 17872427  T
Q  132 tgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaa 231  Q
    ||||||||||||||| || ||||||||| |||| || |||| || || || |||||  |||||| | || |||  ||||||||||  ||||| || ||||    
T  17872426 tgtttcattccaattatccttgaagttctttgtttggttcttcatgtagttagaagaggacaaattgtactattagagtctgatagcgacctattaagaa 17872327  T
Q  232 gatgacaaaaatagtcatagacttttgatgctgacg 267  Q
    |||||| ||| |||  | || ||| |||||||||||    
T  17872326 gatgaccaaactagctagagtcttctgatgctgacg 17872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 6589530 - 6589405
Alignment:
Q  62 gaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcat 161  Q
    |||||||||||||||||| |||| || |||||| |  |||  |||||||||||||||||| |||||||| || |||||||||| |||  ||||||||| |    
T  6589530 gaatgtttcttgatttggataatatcgttgaaaggtcattcgaaattcctttgcttcaaatgaaattatttgattcattccaactgttcttgaagttctt 6589431  T
Q  162 tgtctgtttctacacgtggtcagaag 187  Q
    ||| ||||||| ||||||||||||||    
T  6589430 tgtttgtttctgcacgtggtcagaag 6589405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 12012503 - 12012421
Alignment:
Q  60 tggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattcc 142  Q
    ||||||||| |||||||||||||||| |||||||| |  |||| |||||||||||||||||  | |||||| | |||||||||    
T  12012503 tggaatgttgcttgatttggttaatgccattgaaaggtcatttgaaattcctttgcttcaattggaattatctctttcattcc 12012421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 29231780 - 29231899
Alignment:
Q  104 aaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatatta 203  Q
    |||||| ||||||||||||||| | || ||||||||||   ||||| || |||||| |||| ||||||| | ||| || | ||| ||| |||||||| ||    
T  29231780 aaattcttttgcttcaaaagaagtcatctgtttcattctctttgtccttaaagttctttgt-tgtttctgcgcgtagttaaaagtagagaaactatacta 29231878  T
Q  204 tctgagtctgataatgacctt 224  Q
    || |||||||||| |||||||    
T  29231879 tcagagtctgatagtgacctt 29231899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 7174 - 7377
Alignment:
Q  37 ttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgttt 136  Q
    ||||||| ||| ||||||||   | |||||||||||||||||| |||| || |||||| |  ||| ||||||||||||||||||| ||||||||  | ||    
T  7174 ttgagaagcttaatcatagatgcttgaatgtttcttgatttggataatatcgttgaaaggtcattcaaaattcctttgcttcaaatgaaattattcgatt 7273  T
Q  137 cattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagatga 236  Q
    ||||||||||||| ||||||||| |||| ||||||| ||||||||||||||  |||||| | |||||||  |  || |||||||  |||| |||||||||    
T  7274 cattccaattgtccttgaagttctttgtttgtttctgcacgtggtcagaagaggacaaattgtattatccaaaacttataatgagatttttagaagatga 7373  T
Q  237 caaa 240  Q
    ||||    
T  7374 caaa 7377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 7033 - 6909
Alignment:
Q  46 ttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaat 145  Q
    |||||||| |||  || ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||    
T  7033 ttgatcatggacgttgaaatgtttcttgatttggttaatgtcgttgaaaagatatttgaaatttctttgcttcaaaaggaattatctgtttcattccaat 6934  T
Q  146 tgtctttgaagttcattgtctgttt 170  Q
    |||| || | |||| |||| |||||    
T  6933 tgtccttaatgttctttgtttgttt 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 271
Target Start/End: Complemental strand, 42250897 - 42250654
Alignment:
Q  30 tgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaatta 129  Q
    |||||| |||||||||| ||| | ||||  |||||||| | ||||||||||||||||| |||||||  ||||| ||||| |||||||||||  | |||||    
T  42250897 tgagtccttgagaatctcgatgagagacgttggaatgtcttttgatttggttaatgtcgttgaaaaattatttgaaatttctttgcttcaattggaatta 42250798  T
Q  130 tatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgacctt--ttc 227  Q
    | |||||||||||| ||||||||||||||| || | ||||| | |||| ||| ||||| ||||||| | || ||   | |||||||| |||||||   ||    
T  42250797 tctgtttcattccatttgtctttgaagttctttatttgtttttgcacggggtgagaagaagacaaattgtactactagtgtctgatagtgaccttccatc 42250698  T
Q  228 agaagatgacaaaaatagtcatagacttttgatgctgacgtggc 271  Q
    |||||| ||| ||| ||| || | || |||||||||||||||||    
T  42250697 agaagacgaccaaactagccaaaaacctttgatgctgacgtggc 42250654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 4508065 - 4508263
Alignment:
Q  30 tgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaatta 129  Q
    |||||| ||||||| ||||||||||||   |||||| ||||||||||||| ||||||| || ||||  | || ||||| |||| ||  ||||   ||| |    
T  4508065 tgagtccttgagaaacttgatcatagatgttggaatttttcttgatttggataatgtcgtttaaaattttttgaaaat-ccttggcaacaaacagaatca 4508163  T
Q  130 tatgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcag 229  Q
    | | ||||| |||||||||| ||||||||| |||||| ||||| |||||| ||| |||  |||||| |||| ||||||||||||||| ||| || |||||    
T  4508164 tctatttcactccaattgtccttgaagttctttgtctatttctgcacgtgatcaaaagaggacaaaatatactatctgagtctgatagtgatctcttcag 4508263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 5798335 - 5798272
Alignment:
Q  30 tgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaa 93  Q
    |||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  5798335 tgagtccttgagaagcttaatcatagacattggaatgtttcttgatttggttaatgtcgttgaa 5798272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 27486018 - 27485958
Alignment:
Q  135 ttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    |||||||  |||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  27486018 ttcattcttattgtccttgaagttctttgtctgtttctacacgtggtcagaagaagacaaa 27485958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 31779578 - 31779717
Alignment:
Q  40 agaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcat 139  Q
    |||| |||||||| ||||  || |||||||  |||||||||||||||| |||||| |   ||| |||||||||||| |  |||| ||||||  |||| ||    
T  31779578 agaagcttgatcagagacgttgaaatgttttatgatttggttaatgtcgttgaaaggtcgtttgaaattcctttgcatttaaaggaattatccgttttat 31779677  T
Q  140 tccaattgtctttgaagttcattgtctgtttctacacgtg 179  Q
    |  | ||||||||||||||| |||| ||||||| ||||||    
T  31779678 tttatttgtctttgaagttctttgtttgtttctgcacgtg 31779717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 13291741 - 13291691
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    ||||| ||| ||||| |||| |||||||||||||||||||||| |||||||    
T  13291741 ttgtccttggagttctttgtttgtttctacacgtggtcagaagaagacaaa 13291691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 20648802 - 20648870
Alignment:
Q  175 acgtggtcagaagcagacaaactatatta-tctgagtctgataatgacctt--ttcagaagatgacaaa 240  Q
    ||||||||||||| | ||||| |||| || |||||||||||||||||||||  ||||||||| ||||||    
T  20648802 acgtggtcagaagaatacaaattatactactctgagtctgataatgacctttcttcagaagacgacaaa 20648870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 24141360 - 24141239
Alignment:
Q  150 tttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagatgacaaaaatagtcat 249  Q
    |||||||||| |||| ||||||| |||||||||| |||   |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||     
T  24141360 tttgaagttctttgtttgtttcttcacgtggtcacaagagaacaaactatattatctgagtctgatagtgaccttttcaaaagatgacaaaactagtcag 24141261  T
Q  250 agacttttgatgctgacgtggc 271  Q
    || ||| ||||| |||| ||||    
T  24141260 agtcttctgatgttgacatggc 24141239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 28981163 - 28981335
Alignment:
Q  63 aatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttcatt 162  Q
    ||||||||||||||||||||||||| ||||||||   ||| |||| || |||||||||||||||||||  | |||||| |||||||||||||||||| ||    
T  28981163 aatgtttcttgatttggttaatgtcgttgaaaagtcgtttgaaatccccttgcttcaaaagaaattatccg-ttcattacaattgtctttgaagttcttt 28981261  T
Q  163 gtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcagaagatgacaa 239  Q
    || ||||||| || |||||   ||| ||||||| | || || || ||||||||| |||| | ||||||||| |||||    
T  28981262 gtttgtttctgcaagtggt---aagaagacaaagtgtactacctaagtctgatagtgacatcttcagaagacgacaa 28981335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 11609252 - 11609157
Alignment:
Q  60 tggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaa 155  Q
    |||||| ||||||||| ||||||||||| || |||| ||| |  |||||||||||||||||  | ||||||| ||||||||||  ||||| |||||    
T  11609252 tggaatatttcttgatatggttaatgtcgttaaaaacatactcgaaattcctttgcttcaattggaattataggtttcattccttttgtccttgaa 11609157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 1767492 - 1767654
Alignment:
Q  60 tggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttgaagttc 159  Q
    |||||| || ||||||||||| |||||| ||||| ||  ||| ||| ||||||| ||||      ||| ||||||||||||||  ||||| ||||| |||    
T  1767492 tggaatattgcttgatttggtcaatgtcgttgaatagtcattcaaatttccttttcttcttttagaatgatatgtttcattccttttgtccttgaatttc 1767591  T
Q  160 attgtctgtttctacacgtggtcagaagcagacaaactatattatct-gagtctgataatgac 221  Q
     |||| ||| | | || |||||||||||  |||||||| |||||||| |||||||||| ||||    
T  1767592 tttgtttgtatatgcatgtggtcagaagttgacaaactgtattatctagagtctgatagtgac 1767654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 1777124 - 1777074
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    ||||| ||||||||| |||||||| | |||||||||||||||| |||||||    
T  1777124 ttgtccttgaagttctttgtctgtgtttacacgtggtcagaagaagacaaa 1777074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 27707374 - 27707332
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaag 187  Q
    ||||||||||||||| |||| |||||||||| |||||||||||    
T  27707374 ttgtctttgaagttctttgtttgtttctacatgtggtcagaag 27707332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 19692066 - 19691834
Alignment:
Q  54 agacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcattccaattgtctttg 153  Q
    ||||| |||||||||||||||||||||||||||| ||||||    |||  ||||||||||||||||||  |||||||  |||||||| |||||||| |||    
T  19692066 agacattggaatgtttcttgatttggttaatgtcgttgaaagctcattcgaaattcctttgcttcaaattaaattattcgtttcatttcaattgtccttg 19691967  T
Q  154 aagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgacctt--ttcagaagatgacaaaaatagtcatag 251  Q
    ||| || |||| ||||||||||| | ||||||||  |||||| || | |||| ||||| ||| ||||| ||  ||||||||  |||||||  ||||| ||    
T  19691966 aagctctttgtttgtttctacacatagtcagaagaggacaaattaaactatcagagtcagatgatgactttccttcagaaggcgacaaaatcagtcagag 19691867  T
Q  252 acttttgatgctgacgtggcttctagagcttga 284  Q
     |  |||||||||| ||||| | ||||| ||||    
T  19691866 tccgttgatgctgatgtggcctttagagtttga 19691834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 15586471 - 15586581
Alignment:
Q  31 gagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattat 130  Q
    ||||| ||| ||| |||||||||||| | ||| |||||||||||||||||||||||  |||||||||  ||| ||||||||| | |||||    ||||||    
T  15586471 gagtctttgtgaagcttgatcatagaaattggtatgtttcttgatttggttaatgttgttgaaaagacttttgaaattccttagtttcaactccaattat 15586570  T
Q  131 atgtttcattc 141  Q
     ||||||||||    
T  15586571 ctgtttcattc 15586581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 10814837 - 10814777
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatc 205  Q
    ||||| || |||||| |||| |||||||||||||||||||||  ||||||| |||| ||||    
T  10814837 ttgtcctttaagttctttgtttgtttctacacgtggtcagaatgagacaaattatactatc 10814777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 4268 - 4438
Alignment:
Q  40 agaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattatatgtttcat 139  Q
    |||| ||||||||||||   |||||||||||||||||||||||||||| ||||||||  |||| ||||||||||| |  | ||| ||||||  | |||||    
T  4268 agaagcttgatcatagatgttggaatgtttcttgatttggttaatgtcgttgaaaagtcatttgaaattcctttgttgaacaaggaattatccg-ttcat 4366  T
Q  140 tccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtct 212  Q
    |||| ||||| ||||||||| |||| ||| ||| |||||| ||||||| ||||||| |||| |||||||||||    
T  4367 tccatttgtccttgaagttc-ttgtttgtatctgcacgtgatcagaagaagacaaaatatactatctgagtct 4438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 18038283 - 18038425
Alignment:
Q  31 gagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagata-tttaaaattcctttgcttcaaaagaaatta 129  Q
    ||||| ||||||| |||||||||||||  |||||||||| |||||||| |||||||| ||||| ||| | |||||||||  ||||||||||||| |||||    
T  18038283 gagtctttgagaagcttgatcatagacgttggaatgttttttgatttgattaatgtcgttgaagagacattttaaaattattttgcttcaaaaggaatta 18038382  T
Q  130 tatgtttcattccaattgtctttgaagttcattgtctgtttct 172  Q
    | |||||||||| | ||||| |||| |||  |||| |||||||    
T  18038383 tttgtttcattcgatttgtccttgatgttttttgtttgtttct 18038425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 13112566 - 13112357
Alignment:
Q  31 gagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttcaaaagaaattat 130  Q
    ||||| ||||||| ||| |||| ||||  |||||| ||| ||||||||||||||||| |||||| |  ||| ||| ||| ||||||||||||| |||||     
T  13112566 gagtccttgagaagcttaatcagagacgttggaatattttttgatttggttaatgtcgttgaaatgtcattcaaagttcatttgcttcaaaaggaattac 13112467  T
Q  131 atgtttcattccaattgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatctgagtctgataatgaccttttcaga 230  Q
      |||| ||| |||||||| || |||||| |||| ||| | | |||||||| ||||| ||||||| | || ||||||| | ||||| |||| | |||| |    
T  13112466 ccgttttatttcaattgtcgttaaagttctttgtttgtatatgcacgtggttagaagaagacaaagtgtactatctgaatttgatagtgacttcttcata 13112367  T
Q  231 agatgacaaa 240  Q
    ||| ||||||    
T  13112366 agacgacaaa 13112357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 16587148 - 16587088
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatattatc 205  Q
    ||||| |||||||||||||| ||||| |||| ||||||||||| |||||||||||| ||||    
T  16587148 ttgtccttgaagttcattgtttgtttgtacatgtggtcagaagaagacaaactatactatc 16587088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 26704489 - 26704577
Alignment:
Q  30 tgagtcgttgagaatcttgatcatagacaatggaatgtttcttgatttggttaatgtcattgaaaagatatttaaaattcctttgcttc 118  Q
    |||||| ||||||  |||||||| |||||||||||| || ||||| |||||||||||| ||||| ||  |||| ||||| |||||||||    
T  26704489 tgagtcattgagatgcttgatcagagacaatggaatattgcttgacttggttaatgtcgttgaatagtcatttgaaatttctttgcttc 26704577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 27765656 - 27765607
Alignment:
Q  146 tgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    |||| ||||||||| |||| |||||||||||||||||||||| |||||||    
T  27765656 tgtccttgaagttctttgtttgtttctacacgtggtcagaagaagacaaa 27765607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 25564059 - 25563987
Alignment:
Q  145 ttgtctttgaagttcattgtctgtttctacacgtggtcagaagcagacaaactatatta-tctgagtctgata 216  Q
    |||| |||||| ||| |||| |||||||||||||||||||||| ||||||| |||| || ||| |||||||||    
T  25564059 ttgtttttgaatttctttgtttgtttctacacgtggtcagaagaagacaaattatactactctaagtctgata 25563987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 29409678 - 29409719
Alignment:
Q  154 aagttcattgtctgtttctacacgtggtcagaagcagacaaa 195  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  29409678 aagttctttgtccgtttctacacgtggtcagaagaagacaaa 29409719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 8008 - 7944
Alignment:
Q  10 gaggtgccaacatatcactatgagtcgttgagaatcttgatcatagacaatggaatgtttcttgat 75  Q
    |||||||||||| || ||| |||||| |||| || |||||||||||||| ||||||||||||||||    
T  8008 gaggtgccaacacattactttgagtccttgaaaa-cttgatcatagacattggaatgtttcttgat 7944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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