View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_low_15 (Length: 251)
Name: NF11753_low_15
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8956668 - 8956907
Alignment:
| Q |
1 |
acaacccaccacacatggtacctatcaactctttcttctgcattagaaaatccacaactcacaaaatcaagcaataatctcaactctctattttcttcca |
100 |
Q |
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| T |
8956668 |
acaacccaccacacatggtacctatcaactctttcctcagcattagaaaatccacaactcacaacatcaagcaataatctcaactctctattttcttcca |
8956767 |
T |
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| Q |
101 |
agttaatttacacctacacacatgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatc |
200 |
Q |
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| T |
8956768 |
agttaatttacacctacacacatgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatc |
8956867 |
T |
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| Q |
201 |
cataaaagattcacacatgaaactcgacacaacacattca |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8956868 |
cataaaagattcacacatgaaactcgacacaacacattca |
8956907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 8973195 - 8973262
Alignment:
| Q |
130 |
aatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttc |
197 |
Q |
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| T |
8973195 |
aatggttttagtgctaatctatcacctgaagagcatgaagctctcaaaacttccccagggtacatttc |
8973262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 34964161 - 34963934
Alignment:
| Q |
10 |
cacacatggtacctatcaactctttcttctgcattagaaaatccacaactcacaaaatcaagcaataatctcaactctctattttcttccaagttaattt |
109 |
Q |
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| T |
34964161 |
cacacatggtatcattccactctttcctctgcattagagaaccctcaactcacag---caaccaataatctcaactctccaatttcttctaagttaattt |
34964065 |
T |
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| Q |
110 |
acacctacacacatgtcatgaatggttttagtgctaatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatccataaaaga |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||| ||| |
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| T |
34964064 |
acacctacacacatgtcataaatggttttagtgctaacttatcaccaaaagaacatgaatccctcaaaaatgcaccaggttacatttcatctataagaga |
34963965 |
T |
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| Q |
210 |
ttcacacatgaaactcgacacaacacattca |
240 |
Q |
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|| |||||||||| | ||||||||||||||| |
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| T |
34963964 |
tttacacatgaaaatggacacaacacattca |
34963934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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