View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11753_low_17 (Length: 239)

Name: NF11753_low_17
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11753_low_17
NF11753_low_17
[»] chr5 (2 HSPs)
chr5 (1-222)||(16791461-16791682)
chr5 (45-181)||(37390525-37390661)
[»] chr1 (3 HSPs)
chr1 (1-211)||(35896316-35896535)
chr1 (48-192)||(19227726-19227870)
chr1 (144-206)||(21617052-21617114)
[»] chr3 (6 HSPs)
chr3 (75-206)||(5797926-5798057)
chr3 (60-206)||(4508265-4508410)
chr3 (86-176)||(31375344-31375434)
chr3 (144-206)||(3087880-3087944)
chr3 (144-205)||(14426905-14426965)
chr3 (129-206)||(19705758-19705835)
[»] chr2 (2 HSPs)
chr2 (42-189)||(13112107-13112253)
chr2 (145-206)||(18038712-18038773)
[»] chr4 (1 HSPs)
chr4 (45-186)||(4415335-4415473)
[»] scaffold0217 (1 HSPs)
scaffold0217 (39-206)||(6581-6750)
[»] chr7 (5 HSPs)
chr7 (146-206)||(26822674-26822734)
chr7 (49-186)||(28981469-28981605)
chr7 (144-176)||(1775299-1775331)
chr7 (129-205)||(9396619-9396695)
chr7 (144-208)||(15304948-15305012)
[»] scaffold0498 (1 HSPs)
scaffold0498 (144-206)||(2998-3060)
[»] scaffold0329 (1 HSPs)
scaffold0329 (46-176)||(4581-4711)
[»] chr8 (1 HSPs)
chr8 (144-206)||(12843512-12843573)
[»] chr6 (1 HSPs)
chr6 (129-183)||(22562405-22562459)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16791461 - 16791682
Alignment:
Q  1 cttcttcagagtctgatccttcatatcttagtatccttattttggtccagaacttcaacttctctttaaattttagatgctcttgtatatgttattttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16791461 cttcttcagagtctgatccttcatatcttagtatccttattttggtccagaacttcaacttctctttaaattttagatgctcttgtatatgttattttag 16791560  T
Q  101 taccgaaacttgatttaatacaatgaaatttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattat 200  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16791561 taccgaaacttgatttaatacattgaattttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattat 16791660  T
Q  201 caaaacatcaggaagcattgta 222  Q
    ||||||||||||||||||||||    
T  16791661 caaaacatcaggaagcattgta 16791682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 37390525 - 37390661
Alignment:
Q  45 gtccagaacttcaacttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgt 144  Q
    |||||||||||||  | ||||||||||| || ||| ||||||||||||| ||| |||||| ||||||||||||| ||| |||| |||||||| | ||| |    
T  37390525 gtccagaacttcagatcctctttaaattctaaatgttcttgtatatgttctttcagtaccaaaacttgatttaacacattgaattttagtctatggtcat 37390624  T
Q  145 gcacacttgaacatagattagcgtatccaatttttct 181  Q
     |||| ||||||||  |||||| || |||||| ||||    
T  37390625 tcacatttgaacatgcattagcataaccaattgttct 37390661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 35896316 - 35896535
Alignment:
Q  1 cttcttcagagtctgatccttcatatcttagtatcctt---attttggtccagaacttcaacttctctttaaat------tttagatgctcttgtatatg 91  Q
    ||||||||||||||||||||||| | | ||||||||||   ||  ||||||||||||||| ||||||||  |||      |  | |||||  ||||||||    
T  35896316 cttcttcagagtctgatccttcagaacctagtatcctttagatcctggtccagaacttcagcttctcttcgaatccgaattccatatgctactgtatatg 35896415  T
Q  92 ttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatttttcttttaatacat 191  Q
    || ||| |||||  |||||| |||||||||| | || |||||| ||| ||| | |||||||||||||| |||| | ||| ||||| |||||||||||| |    
T  35896416 ttctttcagtactaaaactttatttaatacatttaattttagtttgtggtcctacacacttgaacatacattaacatattcaattgttcttttaatactt 35896515  T
Q  192 ttttattatcaaaacatcag 211  Q
    | |||| |||||||| ||||    
T  35896516 tcttatcatcaaaacttcag 35896535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 19227726 - 19227870
Alignment:
Q  48 cagaacttcaacttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgtgca 147  Q
    |||||||||| |||||||| |||||| | ||||||||| ||||| | ||| | |||| ||  ||||||||||||| |||| |||||| | | ||| ||||    
T  19227726 cagaacttcagcttctcttcaaatttcaaatgctcttgaatatgatctttcaataccaaattttgatttaatacattgaattttagtttatggtcctgca 19227825  T
Q  148 cacttgaacatagattagcgtatccaatttttcttttaatacatt 192  Q
    |||||||||||| ||||   |||  |||| |||||||||||||||    
T  19227826 cacttgaacatatattaatatatttaattgttcttttaatacatt 19227870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 21617052 - 21617114
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
    |||||||||||||| | |||||| ||| |||||  ||||||||||| || |||||||||||||    
T  21617052 tgcacacttgaacaaatattagcatattcaattgatcttttaatactttgttattatcaaaac 21617114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 5798057 - 5797926
Alignment:
Q  75 agatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaa-tttagtctgtagtcgtgcacacttgaacatagattagcgtatcca 173  Q
    ||||||||||||||||| ||||| || ||||||||||||||| |||| |||||| |||||| | |  |  |||||||||||||||| |||| | ||||||    
T  5798057 agatgctcttgtatatgatatttcagaaccgaaacttgatttgatac-atgaaattttagtttatgattctgcacacttgaacatacattaacatatcca 5797959  T
Q  174 atttttcttttaatacatttttattatcaaaac 206  Q
    ||| |||||||| ||| || |||| ||||||||    
T  5797958 attgttcttttagtaccttgttatcatcaaaac 5797926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 4508265 - 4508410
Alignment:
Q  60 ttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgtgcacacttgaacata 159  Q
    ||||||| |||||| | |||||||| |||| ||| |||||||||| |||||  ||||||||||  ||| || | | | | ||| ||||||||||||||||    
T  4508265 ttctcttcaaatttcaaatgctcttatataagttcttttagtacc-aaactctatttaatacatagaatttcaatttatggtcttgcacacttgaacata 4508363  T
Q  160 gattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
     |||||| |||| | || |||||||||||| || |||| ||||||||    
T  4508364 tattagcatatctagttcttcttttaataccttgttatcatcaaaac 4508410  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 31375434 - 31375344
Alignment:
Q  86 tatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatt 176  Q
    |||||||| ||| |||||| ||||||||||||||||| ||||  ||||||| | | | |||||||||||||||  |||||| |||| ||||    
T  31375434 tatatgttctttcagtaccaaaacttgatttaatacattgaatcttagtctatggccctgcacacttgaacatgcattagcatatcaaatt 31375344  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 3087880 - 3087944
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatt--tttcttttaatacatttttattatcaaaac 206  Q
    |||||||||||||| | |||||| |||||||||  ||| |||||||||||| |||||||||||||    
T  3087880 tgcacacttgaacaaatattagcatatccaattgattttttttaatacattgttattatcaaaac 3087944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 14426965 - 14426905
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaa 205  Q
    |||||||||||||||| |||||| ||||||||| ||| |||||||| || |||| |||||||    
T  14426965 tgcacacttgaacatatattagcatatccaattgttc-tttaatactttgttatcatcaaaa 14426905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 19705758 - 19705835
Alignment:
Q  129 tttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
    |||||||| | ||| |||||||||||||| | |||||| |||||||||   |||||||||| || |||| ||||||||    
T  19705758 tttagtctatggtcatgcacacttgaacaaatattagcatatccaattgaacttttaatactttgttatcatcaaaac 19705835  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 13112253 - 13112107
Alignment:
Q  42 ttggtccagaacttcaacttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagt 141  Q
    |||||| |||| |||| |||||||  |||||||  ||||||||||||||||| || ||| ||| ||||||||||||||||  | || |||||| | | ||    
T  13112253 ttggtctagaaattcagcttctctc-aaattttgaatgctcttgtatatgttcttctagaaccaaaacttgatttaatactttaaattttagtttatggt 13112155  T
Q  142 cgtgcacacttgaacatagattagcgtatccaatttttcttttaatac 189  Q
    |   |||||||||||||| |||||  |||| |||| ||||||||||||    
T  13112154 ctcccacacttgaacatacattagtatatctaattgttcttttaatac 13112107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 18038712 - 18038773
Alignment:
Q  145 gcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||| || |||| || |||||    
T  18038712 gcacacttgaacatacattagcatatccaattgttcttttaataccttgttatcattaaaac 18038773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 4415335 - 4415473
Alignment:
Q  45 gtccagaacttcaacttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgt 144  Q
    |||||||||||||||||||||| |||||  |   |||||||||||| || ||| || | | ||||||||||||||||| |||| |||||||| | ||| |    
T  4415335 gtccagaacttcaacttctcttcaaattccaatcgctcttgtatattttctttcagaatcaaaacttgatttaatacattgaattttagtctatggtcct 4415434  T
Q  145 gcacacttgaacatagattagcgtatccaatttttcttttaa 186  Q
      ||||||||||||| | || | ||||||||| |||||||||    
T  4415435 --acacttgaacataca-tatcatatccaattattcttttaa 4415473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 6750 - 6581
Alignment:
Q  39 attttggtccagaacttcaacttctctttaaattttagatgctctt-gtatatgttattttagtaccgaaacttgatttaatacaatgaaattt-agtct 136  Q
    ||||||||||||| ||| |||||||||| |||||  | || ||||| ||||||||  ||| |||||| |||||  |||||||| | |||| ||| |||||    
T  6750 attttggtccagagcttaaacttctcttcaaattccaaatactctttgtatatgtactttcagtaccaaaactaaatttaatatattgaatttttagtct 6651  T
Q  137 gtagtcgtgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
     | ||| ||||||| |||||||  |||||| ||||||| | |||||||||||| || | || ||||||||    
T  6650 atggtcttgcacacgtgaacatttattagcatatccaactgttcttttaatactttgtcatcatcaaaac 6581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 26822674 - 26822734
Alignment:
Q  146 cacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
    ||||||| |||||| |||||| ||||||||| |||||||||||| || |||||||||||||    
T  26822674 cacacttaaacatatattagcatatccaattgttcttttaatactttgttattatcaaaac 26822734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 28981469 - 28981605
Alignment:
Q  49 agaacttcaacttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgtgcac 148  Q
    ||||||||||||||||||||||||  |  |||||||||||||||| ||  |  ||| ||||||||||| ||||| | || |||||| | | ||  |   |    
T  28981469 agaacttcaacttctctttaaattccaattgctcttgtatatgttcttccataaccaaaacttgatttgatacattaaattttagt-tttggttctcagc 28981567  T
Q  149 acttgaacatagattagcgtatccaatttttcttttaa 186  Q
    ||||||||||| |||||| ||||||||| |||||||||    
T  28981568 acttgaacatacattagcatatccaattgttcttttaa 28981605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 1775331 - 1775299
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatt 176  Q
    ||||||||||||||||||||||| |||||||||    
T  1775331 tgcacacttgaacatagattagcatatccaatt 1775299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 9396695 - 9396619
Alignment:
Q  129 tttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaa 205  Q
    |||||||| | ||| |||||||||||||| | |||||| |||||||||   |||||||||| || |||| |||||||    
T  9396695 tttagtctatggtcatgcacacttgaacaaatattagcatatccaattcaacttttaataccttgttatcatcaaaa 9396619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 15304948 - 15305012
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaacat 208  Q
    |||||||||||||| | |||||| |||||||||   |||||||||| || |||| ||||||||||    
T  15304948 tgcacacttgaacaaatattagcatatccaattgaacttttaataccttgttatcatcaaaacat 15305012  T

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Target: scaffold0498 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 3060 - 2998
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
    |||||||||||||| | |||||| |||||||||   ||||||||||||| |||||||||||||    
T  3060 tgcacacttgaacaaatattagcatatccaattgaacttttaatacattgttattatcaaaac 2998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 4581 - 4711
Alignment:
Q  46 tccagaacttcaacttctctttaaattttagatgctcttgtatatgttattttagtaccgaaacttgatttaatacaatgaaatttagtctgtagtcgtg 145  Q
    |||| |||||||  ||||||| |||||  | |||||||||||||  || || ||| ||  |||||||| ||||||| ||||| |||||| | | ||| ||    
T  4581 tccaaaacttcagtttctcttcaaattccatatgctcttgtatacatttttctagaacgaaaacttgacttaatactatgaattttagtatatggtcctg 4680  T
Q  146 cacacttgaacatagattagcgtatccaatt 176  Q
    |||||||||| ||| |||||| |||||||||    
T  4681 cacacttgaaaatatattagcatatccaatt 4711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 12843512 - 12843573
Alignment:
Q  144 tgcacacttgaacatagattagcgtatccaatttttcttttaatacatttttattatcaaaac 206  Q
    |||||||||||||| | |||||||||||||||| ||| ||| ||||||| |||| ||||||||    
T  12843512 tgcacacttgaacacacattagcgtatccaattattc-tttcatacattattatcatcaaaac 12843573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 22562459 - 22562405
Alignment:
Q  129 tttagtctgtagtcgtgcacacttgaacatagattagcgtatccaatttttcttt 183  Q
    |||| ||| ||||| |||||||||||||||| ||| || ||||||||||||||||    
T  22562459 tttaatctatagtcctgcacacttgaacatatattcgcatatccaatttttcttt 22562405  T

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