View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11753_low_18 (Length: 238)
Name: NF11753_low_18
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 8218424 - 8218213
Alignment:
| Q |
13 |
aaggtggtgtggtggtaaaaacaacacttaatttaatttagtagttagtttattatcattaataaacatatgatcacttgtataatagactaaaaacagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8218424 |
aaggtggtgtggtggtaaaaacaacacttaatttaatttagtagttagtttattatcattaataaacatatgatcacttgtataatagactaaaaacagt |
8218325 |
T |
|
| Q |
113 |
ttattacaacttactcgttcaaaactttgttaacattgtctttgattaggcggaaaagattgatgttgtcattctgcaactggaaacaaaaacgaaagga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8218324 |
ttattacaacttactcgttcaaaactttgttaacattgtctttgattaggcggaaaagattgatgttgtcattctgcaactggaaacaaaaactaaagga |
8218225 |
T |
|
| Q |
213 |
acatgtaaaaat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8218224 |
acatgtaaaaat |
8218213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 8226187 - 8226131
Alignment:
| Q |
101 |
actaaaaacagtttattacaacttactcgttcaaaactttgttaacattgtctttgatta |
160 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
8226187 |
actaaaaacagttta---caacttactcattcaaaactttatcaacattgtctttgatta |
8226131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University