View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_low_3 (Length: 663)
Name: NF11753_low_3
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_3 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 16 - 653
Target Start/End: Complemental strand, 7415552 - 7414915
Alignment:
| Q |
16 |
aaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaagggacta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415552 |
aaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaagggacta |
7415453 |
T |
|
| Q |
116 |
tagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaaagatatagatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415452 |
tagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaaagatatagatgt |
7415353 |
T |
|
| Q |
216 |
aaaaggacatgattttgagttgttaccatttggtgctggtggaaggatgtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415352 |
aaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaat |
7415253 |
T |
|
| Q |
316 |
ttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttttgggctttctacacctaagaaaataccat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415252 |
ttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttttgggctttctacacctaagaaaataccat |
7415153 |
T |
|
| Q |
416 |
tagaaattgttgtggagcctagacttgctgatcatctttactccctttgagtattttctctacttaggttttgtgtttaataaggttgagaattcaacat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415152 |
tagaaattgttgtggagcctagacttgctgatcatctttactccctttgagtattttctctacttaggttttgtgtttaataaggttgagaattcaacat |
7415053 |
T |
|
| Q |
516 |
aattggatttgtgtgagtttaatgtcatcatacttaattacaagagcgnnnnnnntgtagacatgataatgaagaagtatatgatgttggattgttggaa |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
7415052 |
aattggatttgtgtgagtttaatgtcatcatacttaattacaagagcaaaaaaaatgtaggcatgataatgaagaaatatatgatgttggattgttggaa |
7414953 |
T |
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| Q |
616 |
tttacatttagtaatgagtgtagtagtatatccctttg |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7414952 |
tttacatttagtaatgagtgtagtagtatatccctttg |
7414915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 7423211 - 7422766
Alignment:
| Q |
16 |
aaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaagggacta |
115 |
Q |
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||||||||||||||||| ||||| | |||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| ||||| || ||||||||| |
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| T |
7423211 |
aaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaagctagtgaggattgcaatgttgatggttatgatatcccaaaagggactc |
7423112 |
T |
|
| Q |
116 |
tagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaaagatatagatgt |
215 |
Q |
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|| |||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||| ||||| |||||||||||| ||||||| |||||||||| |
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| T |
7423111 |
taattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagtttatacctgagaggtttattggtaataatatagatgt |
7423012 |
T |
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| Q |
216 |
aaaaggacatgattttgagttgttaccatttggtgctggtggaaggatgtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggctaat |
315 |
Q |
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|||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||| |
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| T |
7423011 |
aaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaagtttggctaat |
7422912 |
T |
|
| Q |
316 |
ttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttttgggctttctacacctaagaaaataccat |
415 |
Q |
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|||||||||||||||||||||| |||||||||| || |||| || |||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
7422911 |
ttgttgcatggatttaattggagattacctaatgatatgaagaaagaggatttgaatatggaggagatttttgggctgactactcctaggaaaataccac |
7422812 |
T |
|
| Q |
416 |
tagaaattgttgtggagcctagacttgctgatcatctttactccct |
461 |
Q |
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||||| |||||||||||||||||||| || |||||||||||||||| |
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| T |
7422811 |
tagaagttgttgtggagcctagacttcctcatcatctttactccct |
7422766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 7429620 - 7429161
Alignment:
| Q |
16 |
aaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaagggacta |
115 |
Q |
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||||||||||||||||| ||||| ||| ||||| | ||||||||| ||||||||| ||| ||||||| ||||||||||| ||||| || |||||||||| |
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| T |
7429620 |
aaagaaacaatgaggcttcatcctgtgacaccaatgttagtgccaagagaagctactgagaattgcaatgttgatggttatgatataccaaaagggacta |
7429521 |
T |
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| Q |
116 |
tagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaaagatatagat-- |
213 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| || ||||||||| || || ||||||||| |
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| T |
7429520 |
tgattcttgtcaatacttggacaattggaagagattctgatagttgggataatccatatgaatttataccagagaggtttattaacaatgatatagatat |
7429421 |
T |
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| Q |
214 |
-gtaaaaggacatgattttgagttgttaccatttggtgctggtggaaggatgtgtcctggttaccctcttggtattaaggtgattcaaacaagtttggct |
312 |
Q |
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||||||||||||||| | || |||| ||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| |
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| T |
7429420 |
aataaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggct |
7429321 |
T |
|
| Q |
313 |
aatttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttttgggctttctacacctaagaaaatac |
412 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||| || ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7429320 |
aacttgttgcatggatttaattggagattacctaatgatatgaaaaaagaggatttaaatatggaggagatttttgggctcactacacctaagaaaatac |
7429221 |
T |
|
| Q |
413 |
cattagaaattgttgtggagcctagacttgctgatcatctttactccctttgagtatttt |
472 |
Q |
| |
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|||||||| ||||| ||||||||| |||| | |||||||||| | ||| | |||||||| |
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|
| T |
7429220 |
cattagaagttgttttggagcctaaacttccgtatcatctttattgcctctaagtatttt |
7429161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 91240 - 91196
Alignment:
| Q |
217 |
aaaggacatgattttgagttgttaccatttggtgctggtggaagg |
261 |
Q |
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||||||||||||||| ||||| |||| |||||||||||| ||||| |
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| T |
91240 |
aaaggacatgattttcagttgataccttttggtgctggtagaagg |
91196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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