View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_low_5 (Length: 448)
Name: NF11753_low_5
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 42 - 431
Target Start/End: Original strand, 34732395 - 34732785
Alignment:
| Q |
42 |
ctcaagaaaagctatctatctcagaaaataataagccnnnnnnn-tgtacaaacacatttgaatcaaaacacaattacagcatagaggaatagacaaaac |
140 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34732395 |
ctcaagaaaagctatctatctcagaaaataataagccaaaaaaaatgtacaaacacatttgaatcaaaacacaattacagcatagaggaatagacaaaac |
34732494 |
T |
|
| Q |
141 |
actcatgaaaacttaactatctcagaaaatgattagacaaaaaagacacaaacacatttgaatgacaaaatcacttaaataattattatcaaagtctttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34732495 |
actcatgaaaacttaactatctcagaaaatgattagtcaaaaaagacgcaaacacatttgaatgacaaaatcacttaaataattattatcaaagtctttt |
34732594 |
T |
|
| Q |
241 |
gaaaagagaaaacagtaacatgaatctataaccaaaaattgaaataaattctgcaaaactaacacaaccaaacttagcactactggttgtaatcatcatt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34732595 |
gaaaagagaaaacagtaacatgaatctataaccaaaaattgaaataaattctgcaaaactaacacaaccaaacttagcactactggttgtaatcatcatt |
34732694 |
T |
|
| Q |
341 |
tgataacagtagtaataatagagtgagattcttaacagttaagcttcttgttcatttttatcagcaaaaatgagattcagagaaagagaaa |
431 |
Q |
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| T |
34732695 |
tgataacagtagtaataatagagtgagattcttaacagttaagcttcttgttcatttttatcagcaaaaatgagattcagagaaagagaaa |
34732785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 34722961 - 34723005
Alignment:
| Q |
160 |
tctcagaaaatgattagacaaaaaagacacaaacacatttgaatg |
204 |
Q |
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|||||||| ||||| || ||||||||| ||||||||||||||||| |
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| T |
34722961 |
tctcagaacatgataagtcaaaaaagatacaaacacatttgaatg |
34723005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 34665520 - 34665467
Alignment:
| Q |
163 |
cagaaaatgattagacaaaaaagacacaaacacatttgaatgacaaaatcactt |
216 |
Q |
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|||| |||||| || ||||| |||||||||||||||||||||||||||| |||| |
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| T |
34665520 |
cagacaatgataagccaaaagagacacaaacacatttgaatgacaaaataactt |
34665467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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