View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_low_6 (Length: 395)
Name: NF11753_low_6
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 161 - 383
Target Start/End: Complemental strand, 4078276 - 4078054
Alignment:
| Q |
161 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaac |
260 |
Q |
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| T |
4078276 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttggagtcgaac |
4078177 |
T |
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| Q |
261 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatctt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078176 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatctt |
4078077 |
T |
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| Q |
361 |
cttctccactaatcatctctgct |
383 |
Q |
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||||||||||||||||| ||||| |
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| T |
4078076 |
cttctccactaatcatcactgct |
4078054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 161 - 346
Target Start/End: Complemental strand, 4101031 - 4100846
Alignment:
| Q |
161 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaac |
260 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4101031 |
cacaccatccttcacattccctcagtttaggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagttgaac |
4100932 |
T |
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| Q |
261 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaac |
346 |
Q |
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| T |
4100931 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctacgtgtcaac |
4100846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 4078534 - 4078375
Alignment:
| Q |
1 |
acaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagcttttaaaaaattagcagattcgctaggcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4078534 |
acaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagtttttaaaaaattagcagattcgctaggcgaa |
4078435 |
T |
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| Q |
101 |
taggtcattgcctagcaaatttaacagagaaaacttagtttttcaacttcaatttcattg |
160 |
Q |
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| T |
4078434 |
taggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaatttcattg |
4078375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 4101287 - 4101128
Alignment:
| Q |
1 |
acaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagcttttaaaaaattagcagattcgctaggcgaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4101287 |
acagattcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattaacaaaagatagagtttttaaaaaattagcagattcgctaggcgaa |
4101188 |
T |
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| Q |
101 |
taggtcattgcctagcaaatttaacagagaaaacttagtttttcaacttcaatttcattg |
160 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4101187 |
taggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaatttcattg |
4101128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 4502620 - 4502677
Alignment:
| Q |
186 |
tttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctcccta |
243 |
Q |
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|||||||||||||||| |||||| || ||||| |||||| ||||||||||||||||| |
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| T |
4502620 |
tttgggaggaattccatgaactttaggtacaactgatgcggagtccatatcctcccta |
4502677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 19568774 - 19568715
Alignment:
| Q |
177 |
ttccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatc |
236 |
Q |
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|||| ||| |||| ||||||||||| |||||||||||||| ||||| || |||||||||| |
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| T |
19568774 |
ttccttcactttgagaggaattccatgaacttgagatacagatgatacatagtccatatc |
19568715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 19569053 - 19569000
Alignment:
| Q |
69 |
cttttaaaaaattagcagattcgctaggcgaataggtcattgcctagcaaattt |
122 |
Q |
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||||| ||||||||||| ||||||||| |||||||||| | |||||| |||||| |
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| T |
19569053 |
cttttcaaaaattagcaaattcgctagtcgaataggtcctcgcctagaaaattt |
19569000 |
T |
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