View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11753_low_9 (Length: 288)
Name: NF11753_low_9
Description: NF11753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11753_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4101298 - 4101570
Alignment:
| Q |
1 |
aatgttgcaaagttagcagttacagattataaagcaaaatcactcctgacgttgatgcataaagtttaaatggctagggatatgatcaaccaatagcagg |
100 |
Q |
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| T |
4101298 |
aatgttgcaaagttagcagttacagattataaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggatatgatcaatcaatagcagg |
4101397 |
T |
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| Q |
101 |
gaatgatggtgatgatttgtatgaggatttgcaaatgtcaaggtatatgtttatgactttgttaggatgttagcatgaatttgaattgtttgttactttg |
200 |
Q |
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| T |
4101398 |
gaatgattgtgatgatttgtatgaggatttgcaaatgtcaaggtatatgtttatgactttgttaggatgttagcatgaatttgaattgtttgttactttg |
4101497 |
T |
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| Q |
201 |
atcaagtttattacatccattgttccttagcgatccatgtatgatcatatcaaatgaatatgtttggatatat |
273 |
Q |
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| T |
4101498 |
atcaagtttatttcatccattgttccttagtgatccatgtatgatcatatcaaatgaatatgcttggatatat |
4101570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4078545 - 4078763
Alignment:
| Q |
1 |
aatgttgcaaagttagcagttacagattataaagcaaaatcactcctgacgttgatgcataaagtttaaatggctagggatatgatcaaccaatagcagg |
100 |
Q |
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| T |
4078545 |
aatgttgcaaagttagcagttacagattataaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggatgtgatctatcaatagcagg |
4078644 |
T |
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| Q |
101 |
gaatgatggtgatgatttgtatgaggatttgcaaatgtcaaggtatatgtttatgactttgttaggatgttagcatgaatttgaattgtttgttactttg |
200 |
Q |
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| T |
4078645 |
gaatgattgtgatgat-----------tttgcaaatttcaagttatatatttatgactttgttaggatgttagcatgaatttgaattgtttgttactttg |
4078733 |
T |
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| Q |
201 |
atcaagtttattacatccattgttccttag |
230 |
Q |
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| T |
4078734 |
tgcaagtttatttcattcattgttccttag |
4078763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 4079066 - 4079114
Alignment:
| Q |
225 |
ccttagcgatccatgtatgatcatatcaaatgaatatgtttggatatat |
273 |
Q |
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| T |
4079066 |
ccttagtgatccatgtatgatcatatcaaatgaatatgcttggatatat |
4079114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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