View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11754_high_10 (Length: 201)

Name: NF11754_high_10
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11754_high_10
NF11754_high_10
[»] chr2 (2 HSPs)
chr2 (4-186)||(36286437-36286619)
chr2 (1-45)||(3339166-3339210)
[»] chr4 (7 HSPs)
chr4 (44-134)||(19262870-19262960)
chr4 (1-38)||(44120752-44120789)
chr4 (81-128)||(50875155-50875202)
chr4 (1-35)||(13306933-13306967)
chr4 (4-38)||(22589475-22589509)
chr4 (1-39)||(34625249-34625287)
chr4 (1-37)||(2016252-2016288)
[»] chr6 (7 HSPs)
chr6 (80-139)||(22745474-22745533)
chr6 (1-43)||(2565069-2565111)
chr6 (1-43)||(14168998-14169040)
chr6 (98-135)||(5931799-5931836)
chr6 (1-38)||(28772042-28772079)
chr6 (4-37)||(33265083-33265116)
chr6 (1-37)||(33274229-33274265)
[»] chr1 (5 HSPs)
chr1 (80-126)||(43609760-43609806)
chr1 (1-35)||(46038899-46038933)
chr1 (3-40)||(6912463-6912500)
chr1 (1-33)||(37696250-37696282)
chr1 (1-41)||(40355841-40355881)
[»] scaffold0057 (2 HSPs)
scaffold0057 (93-130)||(30119-30156)
scaffold0057 (93-131)||(50720-50758)
[»] chr8 (2 HSPs)
chr8 (80-124)||(5481971-5482015)
chr8 (86-126)||(27219851-27219891)
[»] chr7 (7 HSPs)
chr7 (1-35)||(36204462-36204496)
chr7 (1-35)||(36801881-36801915)
chr7 (1-38)||(228238-228275)
chr7 (4-37)||(21202885-21202918)
chr7 (86-135)||(31020633-31020682)
chr7 (1-37)||(7380661-7380697)
chr7 (1-41)||(39142470-39142510)
[»] chr5 (4 HSPs)
chr5 (3-37)||(10169012-10169046)
chr5 (3-40)||(12610238-12610275)
chr5 (4-36)||(14514967-14514999)
chr5 (1-45)||(16597030-16597074)
[»] chr3 (1 HSPs)
chr3 (85-131)||(14782804-14782850)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 36286437 - 36286619
Alignment:
Q  4 aaagatagggggccaaaagttcaattaaaccttttataaaatgacataaatgaatgtaatcacgtatgtgagtgttgacaccgacacatgttggacacca 103  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  36286437 aaagatagggggccaaaagtgcaattaagccttttataaaatgacataaatgaatgtaatcacatatgtgagtgttgacaccgacacatgttgaacacca 36286536  T
Q  104 gacacacttttgatcagaagtgtcggtgttataaagtttgagcttctttaaagatacgttgggtttaggggtttgatctgatg 186  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36286537 gacacactttcgatcagaagtgtcggtgttatagagtttgagcttctttaaagacacgttgggtttaggggtttgatctgatg 36286619  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3339166 - 3339210
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttttataaaat 45  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  3339166 tgaaaagatagggggccaaaagtgcaattaagccttatataaaat 3339210  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 19262960 - 19262870
Alignment:
Q  44 atgacataaatgaatgtaatcacgtatgtgagtgttgacaccgacacatgttggacaccagacacacttttgatcagaagtgtcggtgtta 134  Q
    ||||||||| ||||||||||||| | ||| | ||||||||||||||||||| ||||||  ||||||| ||| || ||||||||||||||||    
T  19262960 atgacataattgaatgtaatcacatgtgtcaatgttgacaccgacacatgtcggacactggacacaccttttattagaagtgtcggtgtta 19262870  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44120789 - 44120752
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacctttt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44120789 tgaaaagatagggggccaaaagtgcaattaaacctttt 44120752  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 50875202 - 50875155
Alignment:
Q  81 acaccgacacatgttggacaccagacacacttttgatcagaagtgtcg 128  Q
    |||||||||||||| |||||||| |||| | |||||||||||||||||    
T  50875202 acaccgacacatgtcggacaccaaacacgcctttgatcagaagtgtcg 50875155  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13306933 - 13306967
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacct 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  13306933 tgaaaagatagggggccaaaagtgcaattaaacct 13306967  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 22589475 - 22589509
Alignment:
Q  4 aaagatagggggccaaaagttcaattaaacctttt 38  Q
    |||||||||||||||||||| ||||||||||||||    
T  22589475 aaagatagggggccaaaagtgcaattaaacctttt 22589509  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34625249 - 34625287
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacctttta 39  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  34625249 tgaaaagataggaggccaaaagtgcaattaaacctttta 34625287  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2016288 - 2016252
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttt 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  2016288 tgaaaagatagggggccaaaagtgcaattaagccttt 2016252  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 22745533 - 22745474
Alignment:
Q  80 gacaccgacacatgttggacaccagacacacttttgatcagaagtgtcggtgttataaag 139  Q
    ||||||||  ||||| ||||||||||||||| |||||||||| |||||||||||| ||||    
T  22745533 gacaccgatccatgtcggacaccagacacacctttgatcagaggtgtcggtgttacaaag 22745474  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2565111 - 2565069
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttttataaa 43  Q
    |||||||||||||| |||||||| ||||||| |||||||||||    
T  2565111 tgaaaagataggggtccaaaagtgcaattaagccttttataaa 2565069  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14168998 - 14169040
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttttataaa 43  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  14168998 tgaaaagatagggggccaaaagtgcaattaagccttttctaaa 14169040  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 5931836 - 5931799
Alignment:
Q  98 acaccagacacacttttgatcagaagtgtcggtgttat 135  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  5931836 acaccagacaaacttttaatcagaagtgtcggtgttat 5931799  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28772042 - 28772079
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacctttt 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  28772042 tgaaaagatagggggccaaaagtgcaatcaaacctttt 28772079  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 33265116 - 33265083
Alignment:
Q  4 aaagatagggggccaaaagttcaattaaaccttt 37  Q
    |||||||||||||||||||| |||||||||||||    
T  33265116 aaagatagggggccaaaagtgcaattaaaccttt 33265083  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33274265 - 33274229
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttt 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  33274265 tgaaaagatagggggccaaaagtgcaattaagccttt 33274229  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 43609806 - 43609760
Alignment:
Q  80 gacaccgacacatgttggacaccagacacacttttgatcagaagtgt 126  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||    
T  43609806 gacaccgacacatgttggacactggacacgcttttgatcagaagtgt 43609760  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46038933 - 46038899
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacct 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  46038933 tgaaaagatagggggccaaaagtgcaattaaacct 46038899  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 6912463 - 6912500
Alignment:
Q  3 aaaagatagggggccaaaagttcaattaaaccttttat 40  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  6912463 aaaagatagggggccaaaagtgcaattaaacctattat 6912500  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37696282 - 37696250
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaac 33  Q
    ||||||||||||||||||||||| |||||||||    
T  37696282 tgaaaagatagggggccaaaagtacaattaaac 37696250  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40355881 - 40355841
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttttata 41  Q
    |||||||||||||| |||||||| |||||||||||| ||||    
T  40355881 tgaaaagataggggtccaaaagtgcaattaaaccttatata 40355841  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 30119 - 30156
Alignment:
Q  93 gttggacaccagacacacttttgatcagaagtgtcggt 130  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30119 gttggacaccagacacacctttgatcagaagtgtcggt 30156  T

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Target: scaffold0057; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 50720 - 50758
Alignment:
Q  93 gttggacaccagacacacttttgatcagaagtgtcggtg 131  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  50720 gttggacaccggacacacctttgatcagaagtgtcggtg 50758  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 5481971 - 5482015
Alignment:
Q  80 gacaccgacacatgttggacaccagacacacttttgatcagaagt 124  Q
    |||||||| |||||||||||||||||||| | |||||||||||||    
T  5481971 gacaccgatacatgttggacaccagacacgcgtttgatcagaagt 5482015  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 27219851 - 27219891
Alignment:
Q  86 gacacatgttggacaccagacacacttttgatcagaagtgt 126  Q
    |||||||||| |||||||||||||| || ||||||||||||    
T  27219851 gacacatgttagacaccagacacaccttcgatcagaagtgt 27219891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36204462 - 36204496
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacct 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36204462 tgaaaagatagggggccaaaagtgcaattaaacct 36204496  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36801881 - 36801915
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacct 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36801881 tgaaaagatagggggccaaaagtgcaattaaacct 36801915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 228238 - 228275
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaacctttt 38  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  228238 tgaaaagataggggtccaaaagtgcaattaaacctttt 228275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 21202885 - 21202918
Alignment:
Q  4 aaagatagggggccaaaagttcaattaaaccttt 37  Q
    |||||||||||||||||||| |||||||||||||    
T  21202885 aaagatagggggccaaaagtgcaattaaaccttt 21202918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 31020682 - 31020633
Alignment:
Q  86 gacacatgttggacaccagacacacttttgatcagaagtgtcggtgttat 135  Q
    ||||| ||||||||||| ||||||| ||  ||||||||||||||||||||    
T  31020682 gacacgtgttggacaccggacacaccttccatcagaagtgtcggtgttat 31020633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7380661 - 7380697
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttt 37  Q
    |||||||||||| |||||||||| |||||||||||||    
T  7380661 tgaaaagataggaggccaaaagtacaattaaaccttt 7380697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39142470 - 39142510
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttttata 41  Q
    |||||||||||||| |||||||| ||||||| |||||||||    
T  39142470 tgaaaagataggggaccaaaagtgcaattaagccttttata 39142510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 10169046 - 10169012
Alignment:
Q  3 aaaagatagggggccaaaagttcaattaaaccttt 37  Q
    ||||||||||||||||||||| |||||||||||||    
T  10169046 aaaagatagggggccaaaagtgcaattaaaccttt 10169012  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 12610275 - 12610238
Alignment:
Q  3 aaaagatagggggccaaaagttcaattaaaccttttat 40  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  12610275 aaaagatagggggccaaaagtgcaattaagccttttat 12610238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 14514967 - 14514999
Alignment:
Q  4 aaagatagggggccaaaagttcaattaaacctt 36  Q
    |||||||||||||||||||| ||||||||||||    
T  14514967 aaagatagggggccaaaagtgcaattaaacctt 14514999  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16597074 - 16597030
Alignment:
Q  1 tgaaaagatagggggccaaaagttcaattaaaccttttataaaat 45  Q
    ||||||||||| || |||||||| |||||||||||||||| ||||    
T  16597074 tgaaaagatagaggtccaaaagtgcaattaaaccttttattaaat 16597030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 14782850 - 14782804
Alignment:
Q  85 cgacacatgttggacaccagacacacttttgatcagaagtgtcggtg 131  Q
    |||||| ||||||||||||||||| ||||  ||||||||||||||||    
T  14782850 cgacacgtgttggacaccagacacgctttccatcagaagtgtcggtg 14782804  T

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