View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11754_high_3 (Length: 432)
Name: NF11754_high_3
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 14602717 - 14603133
Alignment:
| Q |
1 |
ccgacggcgctgttcttctcactgcacgctattcttctaagatagtgaccaccactttgaatttattatttctattgttgtttccctaattcgttcttca |
100 |
Q |
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| T |
14602717 |
ccgacggcgctgttcttctcactgcacgctattcttctaagatagtgaccaccactttgaatttattatttctattgttgtttccctaattcgttcttca |
14602816 |
T |
|
| Q |
101 |
atttcaatgaaaataacgttataatctgtaatatgtgaatttaattccaagaaaatgaagtattgttactgcttctttgtggatctctannnnnnnncct |
200 |
Q |
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| T |
14602817 |
atttcaatgaaaataacgttataatctgtaatatgtgaatttaattccaagaaaatgaagtattgttactgcttctttgtggatctctattttttttcct |
14602916 |
T |
|
| Q |
201 |
tcatattctatatgattctgctgtttcttttttaaatgaatgtgattcagtttctaaatatatatagnnnnnnnaatcagcaagtaaaacatatatgatt |
300 |
Q |
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| T |
14602917 |
tcatattctatatgattctgctgtttcttttttaaatgaatgtgattcagtttctaaatatatatagtttttttaatcagcaagtaaaacatatatgatt |
14603016 |
T |
|
| Q |
301 |
ttgttttcttcaaaaaacctttgtttttgacaaatcgctgcaagtagtagttttatctaaaattgcatatatattttacagttttaaaatttggatgcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14603017 |
ttgttttcttcaaaaaacctttgtttttgacaaatcgctgcaagtagtagttttatctaaaattgcatatatattttacagttttaaaatttggatgcat |
14603116 |
T |
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| Q |
401 |
tacatttacattgttga |
417 |
Q |
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| T |
14603117 |
tacatttacattgttga |
14603133 |
T |
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