View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11754_low_10 (Length: 238)
Name: NF11754_low_10
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35044186 - 35044407
Alignment:
| Q |
1 |
tatagcctttgaaattttgggatataacttttccatgataggtttcagtccttatggttcctattggcgcacagtgcgtaagatatccaccatccacgtc |
100 |
Q |
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| T |
35044186 |
tatagcctttgaaattttgggatataacttttccatgataggtttcagtccttacggttcctattggcgcacagtgcgtaagatatccaccatccacgtc |
35044285 |
T |
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| Q |
101 |
ctctccgccacacgaatagatatgcttaaacatgttatggaaactgaggttaagaatgcgatgaaagatagtcactcttctgaaaaggtgttaacagaaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35044286 |
ctctccgccacacggatagatatgcttaaacatgttatggaaactgaggttaagaatgcgatgaaagatagtcactcttctgaaaaggtggtaacagaaa |
35044385 |
T |
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| Q |
201 |
tgaagaaatggtttggtgatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35044386 |
tgaagaaatggtttggtgatat |
35044407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 35029921 - 35030067
Alignment:
| Q |
4 |
agcctttgaaattttgggatataacttttccatgataggtttcagtccttatggttcctattggcgcacagtgcgtaagatatccaccatccacgtcctc |
103 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||| |||||| |
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| T |
35029921 |
agcctttgaaattttagggtataacttttccatgataggtttcagtccttatggttcttattggcgtacagtgcgtaaaatcgccaccgtccatgtcctc |
35030020 |
T |
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| Q |
104 |
tccgccacacgaatagatatgcttaaacatgttatggaaactgaggt |
150 |
Q |
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| T |
35030021 |
tcagctcaacggatagatatgcttaaacatgtaatggaatctgaggt |
35030067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 35036025 - 35036201
Alignment:
| Q |
1 |
tatagcctttgaaattttgggatataacttttccatgataggtttcagtccttatggttcctattggcgcacagtgcgtaagatatccaccatccacgtc |
100 |
Q |
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||||||||||||||| |||| ||||||| ||||||| | ||| | ||||| || ||||| |||||||| ||| |||||||||| |||| |||||||| |
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| T |
35036025 |
tatagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaagatcgccactgtccacgtc |
35036124 |
T |
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| Q |
101 |
ctctccgccacacgaatagatatgcttaaacatgttatggaaactgaggttaagaatgcgatgaaagatagtcactc |
177 |
Q |
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| T |
35036125 |
ctctcagctcaacgaatagatatgcttaaacatgttatggaatctgaggtgaagaaagctatgaaagatagttactc |
35036201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 35019826 - 35019975
Alignment:
| Q |
1 |
tatagcctttgaaattttgggatataacttttccatgataggtttcagtccttatggttcctattggcgcacagtgcgtaagatatccaccatccacgtc |
100 |
Q |
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||||||||||||||| |||| ||||||| ||||||| | ||||| |||||||||||||| |||||||| || |||||||| || |||| | || ||| |
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| T |
35019826 |
tatagcctttgaaatcatgggttataactcttccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaaaattgccactgttcatgtc |
35019925 |
T |
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| Q |
101 |
ctctccgccacacgaatagatatgcttaaacatgttatggaaactgaggt |
150 |
Q |
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||||| || ||| |||||||||||||||||||| |||||| ||||||| |
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| T |
35019926 |
ctctcagctcaacggatagatatgcttaaacatgtaatggaatctgaggt |
35019975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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