View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11754_low_13 (Length: 220)

Name: NF11754_low_13
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11754_low_13
NF11754_low_13
[»] chr4 (4 HSPs)
chr4 (13-174)||(14174964-14175126)
chr4 (13-174)||(28610752-28610913)
chr4 (175-220)||(28608156-28608201)
chr4 (175-220)||(14177673-14177718)
[»] chr8 (2 HSPs)
chr8 (13-174)||(12931694-12931856)
chr8 (175-220)||(12934403-12934448)
[»] chr5 (1 HSPs)
chr5 (22-161)||(38996370-38996510)
[»] chr3 (2 HSPs)
chr3 (13-90)||(24875544-24875621)
chr3 (108-174)||(24874632-24874698)
[»] chr7 (2 HSPs)
chr7 (175-220)||(15300189-15300234)
chr7 (175-219)||(33415690-33415734)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 14174964 - 14175126
Alignment:
Q  13 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgcgg-ggagaa 111  Q
    ||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||    
T  14174964 cagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgttttcactgcggcgaagaa 14175063  T
Q  112 ggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 174  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14175064 ggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaa 14175126  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 28610913 - 28610752
Alignment:
Q  13 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgcgggga-gaa 111  Q
    ||||| |||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28610913 cagaggcagaagcaagagcggggggagatccaataaatccaa-gacagatcacaatctcaacctcgaagaaagttcaagtgttttcactgcggcgaagaa 28610815  T
Q  112 ggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 174  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28610814 ggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaa 28610752  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 28608201 - 28608156
Alignment:
Q  175 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  28608201 gatgtatgcaatggtttgcaccaggccagatattgctcatgcagtt 28608156  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 14177673 - 14177718
Alignment:
Q  175 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 220  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14177673 gatgtatgcaatggtttgcaccaggccagatattgctcatgtagtt 14177718  T

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Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 12931694 - 12931856
Alignment:
Q  13 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgc-ggggagaa 111  Q
    ||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||    
T  12931694 cagaggcagaagcaagagcggggggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaagttcaagtgttttcactgcaacgaagaa 12931793  T
Q  112 ggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 174  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  12931794 ggtcacatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaagaccggaggaatcaa 12931856  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12934403 - 12934448
Alignment:
Q  175 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  12934403 gatgtatgcaatggtttgcaccaggccagatattgctcatgcagtt 12934448  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 38996510 - 38996370
Alignment:
Q  22 aagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaagtgttttcactgcgg-ggagaaggtcatatg 120  Q
    |||||||||||||| | |||||||||||||||| ||   |||||| ||||||| |  |||||  |||||||||| ||||||||| ||||||| ||| ||     
T  38996510 aagtaagagcagagagtgatccaataaatccaatgatttatcacagtctcaactttaaagaatgttcaagtgttatcactgcggcggagaagatcacatc 38996411  T
Q  121 aaaagaaattgcaaatcttggaagaacaaagaaaagaagga 161  Q
     |||||||||| |||||||||||||| ||| |||| |||||    
T  38996410 caaagaaattgtaaatcttggaagaaaaaataaaataagga 38996370  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 24875621 - 24875544
Alignment:
Q  13 cagagacagaagtaagagcagagggagatccaataaatccaaagacagatcacaatctcaacctcgaagaaatttcaa 90  Q
    ||||| ||||||||||||| || || |||||||||||||||||||||||| ||| ||||||||||||| ||| |||||    
T  24875621 cagaggcagaagtaagagctgatggtgatccaataaatccaaagacagattacagtctcaacctcgaaaaaagttcaa 24875544  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 24874698 - 24874632
Alignment:
Q  108 agaaggtcatatgaaaagaaattgcaaatcttggaagaacaaagaaaagaaggatcggaggaatcaa 174  Q
    ||||||||| || ||||||||||| |||   ||||||| ||||||||||||||||  ||||||||||    
T  24874698 agaaggtcacataaaaagaaattgaaaacaatggaagagcaaagaaaagaaggataagaggaatcaa 24874632  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 15300189 - 15300234
Alignment:
Q  175 gatgtatgcaatggtttgcactaggccagatattgctcatgcagtt 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15300189 gatgtatgcaatggtttgcaccaggccagatattgctcatgcagtt 15300234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 33415734 - 33415690
Alignment:
Q  175 gatgtatgcaatggtttgcactaggccagatattgctcatgcagt 219  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  33415734 gatgtatgcaatggtttgcactagaccagatatagctcatgcagt 33415690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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