View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11754_low_2 (Length: 505)
Name: NF11754_low_2
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 54289941 - 54289453
Alignment:
| Q |
1 |
gcagtatattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcgaccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289941 |
gcagtatattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcgaccctc |
54289842 |
T |
|
| Q |
101 |
accaggactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataatttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289841 |
accaggactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataatttcag |
54289742 |
T |
|
| Q |
201 |
ttttgagaagtctttcactgtctcaataataata--cattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttataacatg |
298 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289741 |
ttttgagaagtctttcactgtctcattaataatatacattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttataacatg |
54289642 |
T |
|
| Q |
299 |
tactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgatttacaatctatgagtttagcagccacaccaggtgg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289641 |
tactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgatttacaatctatgagtttagcagccacaccaggtgg |
54289542 |
T |
|
| Q |
399 |
ttttttccagcttctatccaacccactaacctgtcatattcatattaagcaaaatagggtgaatattaagcattagctgaaactggtag |
487 |
Q |
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| T |
54289541 |
ttttttccagcttctatccaacccactaacctgtcatattcatattaggcaaaatagggtgaatattaagcattagctgaaactggtag |
54289453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Original strand, 11684338 - 11684815
Alignment:
| Q |
6 |
atattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcgaccctcaccag |
105 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684338 |
atatcgaatagtacctgtcctgtcgctgtatacagtctgttataccaaccatctgttaacatcccaatagctgaatatagatgtttgcgaccctcaccag |
11684437 |
T |
|
| Q |
106 |
gactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataatttcagttttg |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || | ||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
11684438 |
gactttgcagcgtatactcaataaaataaaatcctgaaccgttttttggaggcaaattaataattagaacgtcaaaattcaatccataatttcagttttg |
11684537 |
T |
|
| Q |
206 |
agaagtctttcactgtctcaataataatacattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttataacatgtactgta |
305 |
Q |
| |
|
|||||||| || |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
11684538 |
agaagtctctctctgtctcattaagcatacattagaactatatataacctataacatattttctttcccttatagttgcaaccttataacatgtactgca |
11684637 |
T |
|
| Q |
306 |
atgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgatttacaatctatgagtttagcagccacaccaggtggttttttc |
405 |
Q |
| |
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| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11684638 |
aaataatgcagcaactttcaatgacatttaagagtaaaagcatgcacctttagatgatttacaatctatgagtttagcagccacaccaggtggttttttc |
11684737 |
T |
|
| Q |
406 |
cagcttctatccaacccactaacctgtcatattcatattaagcaaaatagggtgaatattaagcattagctgaaactg |
483 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11684738 |
cagcttctgtccaacccactaacctgtcatattcatattaagcaaaatagggtgaatattaagcattagctgaaactg |
11684815 |
T |
|
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