View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11754_low_4 (Length: 365)

Name: NF11754_low_4
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11754_low_4
NF11754_low_4
[»] chr3 (2 HSPs)
chr3 (1-357)||(14602380-14602736)
chr3 (1-52)||(40817892-40817943)
[»] chr5 (2 HSPs)
chr5 (1-52)||(21267671-21267722)
chr5 (1-52)||(21267924-21267975)
[»] chr6 (1 HSPs)
chr6 (1-52)||(440877-440928)
[»] chr7 (1 HSPs)
chr7 (1-48)||(23096511-23096558)
[»] chr4 (3 HSPs)
chr4 (13-52)||(23707551-23707590)
chr4 (13-52)||(23707296-23707335)
chr4 (1-52)||(55466370-55466421)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 14602380 - 14602736
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtattttgttgttgctatttgtgtgtgttaatttcatctctcattccctctct 100  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14602380 atctatccatcgcaggtgtttcaggttaggtttctatgctttgttacgtattttgttgttgctatttgtgtgtgttaatttcatctctcattccctctct 14602479  T
Q  101 ttctctgttcccctctttcacaatttgtttagatgagcttttcagatcgcagcacaccatcgtttccggccaaacctccttcatcgcaaccacaaccaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14602480 ttctctgttcccctctttcacaatttgtttagatgagcttttcagatcgcagcacaccatcgtttccggccaaacctccttcatcgcaaccacaaccaca 14602579  T
Q  201 tttcagcgtgaatctttttgtgttttaatgtgcaaataataatatctacagcattgtgaacaaattatgtttggtaaggaacaaaatacaaccaataaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14602580 tttcagcgtgaatctttttgtgttttaatgtgcaaataataatatctacagcattgtgaacaaattatgtttggtaaggaacaaaatacaaccaataaaa 14602679  T
Q  301 aacacagcaaggaagatggttctcaccaaggtcgttaccgacggcgctgttcttctc 357  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14602680 aacacagcaaggaagatgattctcaccaaggtcgttaccgacggcgctgttcttctc 14602736  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40817892 - 40817943
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    ||||||||||  |||||||| |||||||||||| ||||||||||||| ||||    
T  40817892 atctatccatggcaggtgctccaggttaggtttttatgctttgttacttatt 40817943  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21267671 - 21267722
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  21267671 atctatccatcgcaggtgcttcaggtttggtttctatgctttgttacgtatt 21267722  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21267924 - 21267975
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  21267924 atctatccattgcaggtgcttcaggttaggtttctatgctttgttacttatt 21267975  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 440877 - 440928
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||    
T  440877 atctattcatcgcaggtgcttcaggttaggtttctatgctttgttacttatt 440928  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23096558 - 23096511
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacg 48  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  23096558 atctatccatcgcaggtgcttcaggtttgatttctatgctttgttacg 23096511  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 23707590 - 23707551
Alignment:
Q  13 caggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  23707590 caggtgcttcaggtttggtttctatgctttgttacgtatt 23707551  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 23707335 - 23707296
Alignment:
Q  13 caggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  23707335 caggtgcttcaggttaggtttttatgctttgttacttatt 23707296  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 55466370 - 55466421
Alignment:
Q  1 atctatccatcccaggtgcttcaggttaggtttctatgctttgttacgtatt 52  Q
    |||| |||||| ||| |||||||||||||||||||||| |||||| ||||||    
T  55466370 atctctccatcgcagttgcttcaggttaggtttctatgttttgtttcgtatt 55466421  T

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