View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11754_low_5 (Length: 351)
Name: NF11754_low_5
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 28208359 - 28208030
Alignment:
| Q |
17 |
agtatgaagcactaacacgtcttcaccaataataa--------ttaattgaatgaatgtaatatcacatgtgacgatgatgtctttgataaaaagttttg |
108 |
Q |
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| T |
28208359 |
agtatgaagcactgacacgtcttaaccaataataaataaataattaattgaatgaatgtaatatcacatgtgacgatgatgtctttgataaaaagttttg |
28208260 |
T |
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| Q |
109 |
gtgttgcatagtctataaagaaatccttgttactgatttcaatttcaatcaaatcaaggaggaaaatggggaataaaaataatgtcgagagagtgagtaa |
208 |
Q |
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| T |
28208259 |
gtgttgcatagtctataaagaaatccttgttactgatttcaatttcaatcaaatcaaggaggaaaatggggaataaaaataatgtcgagagagtgagtaa |
28208160 |
T |
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| Q |
209 |
agtaaatctgaagagaaaggtaaattgaattgaattgaagataggatagtataggaacctgtttctggaacattggagaatcatcaagcttcacgaaaga |
308 |
Q |
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||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28208159 |
agtaaatctgaagagaaagatgaattgaat-----tgaagataggatagtataggaacctgtttctggaacattggagaatcatcaagcttcacgaaaga |
28208065 |
T |
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| Q |
309 |
agacgccattgctgtctgtttgtctgatctctgct |
343 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
28208064 |
agacgccattgctgtctgtttgtctgatctttgct |
28208030 |
T |
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