View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11754_low_6 (Length: 346)
Name: NF11754_low_6
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 22837144 - 22837476
Alignment:
| Q |
10 |
gatggacatcaaatccatggacacattccaaatataaacctgtcttacctccaagactttaatgtctctggtaacaacctctctggtagagtacctgaat |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22837144 |
gatggaaatcaaatccatggacacattccaaatataaacctgtcttacctccaagacttcaatgtctctggtaacaacctctctggtagagtacctgaat |
22837243 |
T |
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| Q |
110 |
tactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattgcaaaaatgtaaagacgttcctgcccttgcttcgtcgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22837244 |
tactttcgggttttcctgattcatcttttgctcaaaacccgtctttatgtggtgctccattgcaaaaatgtaaagacgttcctgcccttgcttcatcgtt |
22837343 |
T |
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| Q |
210 |
ggttccatcttcttcgagtataatgtcgagaaacaagactaatagaaatggtggtccaagaatggggactttggtgttaatcgccattatcctcggcgat |
309 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22837344 |
ggttccatcttcttcaagtataatgtcgagaaacaagactcatagaaatggtggtccaagaatggggactttggttttaatcgccattatcctcggcgat |
22837443 |
T |
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| Q |
310 |
gtattagtactcgcagttgtctctctgcttctc |
342 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
22837444 |
gtattagtactcgcagttgtctcattgcttctc |
22837476 |
T |
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