View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11754_low_7 (Length: 336)

Name: NF11754_low_7
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11754_low_7
NF11754_low_7
[»] chr8 (7 HSPs)
chr8 (19-323)||(24303794-24304097)
chr8 (142-211)||(16679818-16679887)
chr8 (169-212)||(16210678-16210721)
chr8 (171-208)||(3185207-3185244)
chr8 (174-207)||(14242636-14242669)
chr8 (135-231)||(3185760-3185856)
chr8 (141-205)||(42684127-42684190)
[»] chr4 (8 HSPs)
chr4 (141-238)||(21867804-21867901)
chr4 (141-238)||(21923665-21923762)
chr4 (143-196)||(31533878-31533931)
chr4 (142-209)||(47820240-47820307)
chr4 (176-227)||(3892474-3892525)
chr4 (95-192)||(4124786-4124884)
chr4 (176-238)||(12034390-12034452)
chr4 (181-242)||(40407678-40407739)
[»] chr2 (4 HSPs)
chr2 (91-212)||(22010064-22010185)
chr2 (163-196)||(25427293-25427326)
chr2 (141-186)||(41784859-41784904)
chr2 (171-211)||(26059709-26059749)
[»] chr7 (7 HSPs)
chr7 (146-245)||(17759187-17759286)
chr7 (166-210)||(27486113-27486157)
chr7 (174-250)||(41313611-41313687)
chr7 (135-194)||(31104551-31104610)
chr7 (171-209)||(41313434-41313472)
chr7 (171-232)||(32621978-32622039)
chr7 (180-225)||(33112563-33112608)
[»] chr1 (5 HSPs)
chr1 (135-246)||(37047423-37047534)
chr1 (141-238)||(30202853-30202948)
chr1 (91-192)||(25009246-25009347)
chr1 (170-238)||(34911503-34911571)
chr1 (144-225)||(3496057-3496139)
[»] chr6 (4 HSPs)
chr6 (96-213)||(535822-535939)
chr6 (142-211)||(5959636-5959705)
chr6 (171-225)||(5959805-5959859)
chr6 (181-240)||(33806656-33806715)
[»] chr3 (5 HSPs)
chr3 (135-240)||(31132572-31132676)
chr3 (171-211)||(43461129-43461169)
chr3 (141-196)||(8877214-8877268)
chr3 (141-213)||(26559507-26559579)
chr3 (176-228)||(51889775-51889827)
[»] chr5 (3 HSPs)
chr5 (177-239)||(22566428-22566490)
chr5 (171-245)||(25021015-25021089)
chr5 (141-238)||(22727496-22727590)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 24304097 - 24303794
Alignment:
Q  19 gtctctggatgtatcttatatttgaaaacacatccacaagtgtcgagtcaatatggtgcttgaatctgcttataggtagtcaatttggtcctcaaatgtg 118  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24304097 gtctctggatgtatcttatattcgaaaacacatccacaagtgttgagtcaatatggtgcttgaatctgcttataggtagtcaatttggtcctcaaatgtg 24303998  T
Q  119 tattttattggtctagtagtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgcctt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24303997 tattttattggtctagtagtctataaaattactaacaaaagaagcactagaaatgtgtttgcaattttgatacatttaaggactatagtgacaacgcctt 24303898  T
Q  219 acacattcagggactaaaataattgtttgctcttttagcatttattaatgtagcattaacgtagtaaattattgtgttagtattaattaataacttagat 318  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24303897 acacattcagggactaaaataattgtttgcccttttagagtttattaatgtagcattaa-gtagtaaattattgtattagtattaattaataacttagat 24303799  T
Q  319 ctgtg 323  Q
    |||||    
T  24303798 ctgtg 24303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 16679818 - 16679887
Alignment:
Q  142 taaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgaca 211  Q
    ||||||||||||||||||| |||||||| |  || ||||||||||||||  |||| ||||||||| ||||    
T  16679818 taaaattactaacaaaagaggcactagggacatgcttgcaattttgatatgtttagggactatagagaca 16679887  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 16210678 - 16210721
Alignment:
Q  169 gaatgtgtttgcaattttgatacatttaaggactatagtgacaa 212  Q
    |||||| ||||||||||||||||||||| || ||||||||||||    
T  16210678 gaatgtatttgcaattttgatacatttaggggctatagtgacaa 16210721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 3185244 - 3185207
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtg 208  Q
    |||||||||||||||||||||||||| || ||||||||    
T  3185244 atgtgtttgcaattttgatacatttaggggctatagtg 3185207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 14242669 - 14242636
Alignment:
Q  174 tgtttgcaattttgatacatttaaggactatagt 207  Q
    |||||||||||| |||||||||||||||||||||    
T  14242669 tgtttgcaatttcgatacatttaaggactatagt 14242636  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 3185760 - 3185856
Alignment:
Q  135 tagtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcaggga 231  Q
    ||||| |||||||| |||||| |||| || ||||| | || ||| ||||||| ||||||||  | |||||||| |||| | || |||||||||||||    
T  3185760 tagtccataaaatttctaacagaagaggccctagggaagtatttacaattttaatacatttgggaactatagtaacaatgtctcacacattcaggga 3185856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 42684127 - 42684190
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactata 205  Q
    ||||||||||||||||||||  |||| || ||||||||| || ||||||||||| | ||||||||    
T  42684127 ataaaattactaacaaaagagacacttgggatgtgtttgtaa-tttgatacattcatggactata 42684190  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 21867804 - 21867901
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 238  Q
    |||||||||||||||||||| | |||||| |||||||||||||||  |||| |||| |||| ||||||||||||||| | |||||||||||| |||||    
T  21867804 ataaaattactaacaaaagaggaactagggatgtgtttgcaatttcaatacgtttagggaccatagtgacaacgcctcaaacattcagggaccaaaat 21867901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 21923665 - 21923762
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 238  Q
    |||||||||||||||||||| | |||||| |||||||||||||||  |||| |||| |||| ||||||||||||||| | |||||||||||| |||||    
T  21923665 ataaaattactaacaaaagaggaactagggatgtgtttgcaatttcaatacgtttagggaccatagtgacaacgcctcaaacattcagggaccaaaat 21923762  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 31533878 - 31533931
Alignment:
Q  143 aaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacattta 196  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||||||||    
T  31533878 aaaatgactaacaaaagaagcactagggatttgtttgcaattttgatacattta 31533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 47820240 - 47820307
Alignment:
Q  142 taaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtga 209  Q
    |||||||| | |||||||||||| || || ||||||| ||||||||||||||||| ||||||||||||    
T  47820240 taaaattattcacaaaagaagcagtacgattgtgtttacaattttgatacatttagggactatagtga 47820307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 3892474 - 3892525
Alignment:
Q  176 tttgcaattttgatacatttaaggactatagtgacaacgccttacacattca 227  Q
    |||| |||||||||||||| || |||||||||||||||| ||||||||||||    
T  3892474 tttgtaattttgatacattcaacgactatagtgacaacgacttacacattca 3892525  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 4124786 - 4124884
Alignment:
Q  95 tagtcaatttggtcctcaaatgtgtattttattggtctagt-agtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgataca 192  Q
    |||||| ||| |||||||||||||| |||| |||||| | | |||| || ||||||||||||||||| |||||| | |||| |||| ||| | ||||||    
T  4124786 tagtcattttagtcctcaaatgtgttttttgttggtcaatttagtccatgaaattactaacaaaagaggcactaaggatgtatttgtaatatcgataca 4124884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 12034452 - 12034390
Alignment:
Q  176 tttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 238  Q
    ||||||||||||||||||| | ||||||| ||||| || | ||| |||||||||||| |||||    
T  12034452 tttgcaattttgatacattgagggactattgtgactactcgttatacattcagggaccaaaat 12034390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 40407678 - 40407739
Alignment:
Q  181 aattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaataatt 242  Q
    |||||||||||||| |||||||||  ||   || |||||||||||||||||| |||||||||    
T  40407678 aattttgatacattgaaggactattatggttactccttacacattcagggaccaaaataatt 40407739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 22010185 - 22010064
Alignment:
Q  91 taggtagtcaatttggtcctcaaatgtgtattttattggtctagta-gtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgat 189  Q
    |||||||||||| | |||||||||||||| |||| || ||| | |  ||| |||||||||||||||||||| |  ||||| ||||||||||||||| |||    
T  22010185 taggtagtcaatatagtcctcaaatgtgttttttgttcgtcaatttcgtccataaaattactaacaaaagaggttctagggatgtgtttgcaatttagat 22010086  T
Q  190 acatttaaggactatagtgacaa 212  Q
    |||||| || |||||||||||||    
T  22010085 acattt-agaactatagtgacaa 22010064  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 25427326 - 25427293
Alignment:
Q  163 cactaggaatgtgtttgcaattttgatacattta 196  Q
    ||||||||||||||||||||||| ||||||||||    
T  25427326 cactaggaatgtgtttgcaatttcgatacattta 25427293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 41784859 - 41784904
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaatttt 186  Q
    ||||||||||||||||| ||| |||||| ||| |||||||||||||    
T  41784859 ataaaattactaacaaatgaaacactagaaatatgtttgcaatttt 41784904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 26059749 - 26059709
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtgaca 211  Q
    ||||| |||||||||||||||||| |||||||||| |||||    
T  26059749 atgtgcttgcaattttgatacattcaaggactataatgaca 26059709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 17759187 - 17759286
Alignment:
Q  146 attactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaataattgtt 245  Q
    |||| |||||||||| |||||| |   ||||||||||||| |||||||||||||| ||||||| ||||| || |||||||||| |||| |||| ||||||    
T  17759187 attattaacaaaagaggcactaaggtcgtgtttgcaatttcgatacatttaaggattatagtggcaacgtctcacacattcagagactgaaatgattgtt 17759286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 27486113 - 27486157
Alignment:
Q  166 taggaatgtgtttgcaattttgatacatttaaggactatagtgac 210  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||    
T  27486113 tagggatgtgtttgcaattttgatacatttagagactatagtgac 27486157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 41313611 - 41313687
Alignment:
Q  174 tgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaataattgtttgctc 250  Q
    |||||||||||| ||||||||||||||||| ||| |||  |||  | |||||||||||| |||||  ||||||||||    
T  41313611 tgtttgcaatttagatacatttaaggactacagttacagtgccgcatacattcagggaccaaaatggttgtttgctc 41313687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 31104610 - 31104551
Alignment:
Q  135 tagtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatt 194  Q
    ||||||||||||||||| ||||||||  || |  ||||||||||| ||||||||||||||    
T  31104610 tagtctataaaattactgacaaaagagacattgagaatgtgtttgtaattttgatacatt 31104551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 41313472 - 41313434
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtga 209  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  41313472 atgtgtttgcaattttgatacatttacgaactatagtga 41313434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 32621978 - 32622039
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggac 232  Q
    ||||||||| ||||||||||||||| ||| |||||||||||  ||  |||||||| ||||||    
T  32621978 atgtgtttgtaattttgatacatttgaggcctatagtgacagtgcggtacacatttagggac 32622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 33112563 - 33112608
Alignment:
Q  180 caattttgatacatttaaggactatagtgacaacgccttacacatt 225  Q
    ||||||||||||||| ||| |||||| ||||||||||| |||||||    
T  33112563 caattttgatacattcaagaactataatgacaacgcctcacacatt 33112608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 37047423 - 37047534
Alignment:
Q  135 tagtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggacta 234  Q
    |||||| |||||| || |||||||||| |||| ||||||  |||||| ||| |||||||| |||||||||| |||||||  || ||||||| |||||  |    
T  37047423 tagtctctaaaatcacaaacaaaagaaacactcggaatgcatttgcagtttcgatacattcaaggactataatgacaacatctcacacatttagggaaca 37047522  T
Q  235 aaataattgttt 246  Q
    ||||||||||||    
T  37047523 aaataattgttt 37047534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 30202853 - 30202948
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 238  Q
    |||||||||||||||||||| ||||||   || |||||||||||| ||||| |||| | ||| ||||||||| | ||  ||||||||||||| |||||    
T  30202853 ataaaattactaacaaaagaggcactaaagatttgtttgcaatttagatacctttaggaactttagtgacaatgtct--cacattcagggaccaaaat 30202948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 25009347 - 25009246
Alignment:
Q  91 taggtagtcaatttggtcctcaaatgtgtattttattggtctagtagtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgata 190  Q
    |||||||||||||| |||||||||||||| ||| ||      | ||||| |||||||||| || ||||||| ||||||| |||| ||||||||||| |||    
T  25009347 taggtagtcaatttagtcctcaaatgtgtttttcatcatcaaattagtccataaaattaccaataaaagaaacactaggcatgtttttgcaattttaata 25009248  T
Q  191 ca 192  Q
    ||    
T  25009247 ca 25009246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 34911571 - 34911503
Alignment:
Q  170 aatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 238  Q
    ||||||||||| | || |||||||||| ||||||||||||||  |  | ||||||||||||||||||||    
T  34911571 aatgtgtttgcgacttcgatacatttagggactatagtgacagtgtatcacacattcagggactaaaat 34911503  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 3496057 - 3496139
Alignment:
Q  144 aaattactaacaaaagaagcactagga-atgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacatt 225  Q
    |||||||||||| ||||  |||| ||| |||| |||  |||||||||| |||||  ||||||||||||||| |||||||||||    
T  3496057 aaattactaacataagacacacttggagatgtttttataattttgatatatttatcgactatagtgacaacaccttacacatt 3496139  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 535822 - 535939
Alignment:
Q  96 agtcaatttggtcctcaaatgtgtattttattggtctagt-agtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatt 194  Q
    ||||||| |||||||||||||||| ||   |||||| | | |||| |||||||||||||||||||| |  ||||| || | |||||||||||||||||||    
T  535822 agtcaatatggtcctcaaatgtgttttccgttggtcaattcagtccataaaattactaacaaaagaggttctagggatat-tttgcaattttgatacatt 535920  T
Q  195 taaggactatagtgacaac 213  Q
    ||  |||||||||||||||    
T  535921 tagagactatagtgacaac 535939  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 5959705 - 5959636
Alignment:
Q  142 taaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgaca 211  Q
    ||||||||| ||||||||||||| |||| |||||||| | ||||| ||||||||| ||||||||||||||    
T  5959705 taaaattacaaacaaaagaagcaatagggatgtgtttccgatttttatacatttagggactatagtgaca 5959636  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 5959805 - 5959859
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacatt 225  Q
    |||| |||||||||| ||||||||  ||||||||||||||||||||| |||||||    
T  5959805 atgtatttgcaatttcgatacattctaggactatagtgacaacgcctcacacatt 5959859  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 33806715 - 33806656
Alignment:
Q  181 aattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaataa 240  Q
    ||||| |||||||| ||||| ||| ||||| || ||||||||||||| ||||||||||||    
T  33806715 aatttcgatacattaaaggattattgtgactactccttacacattcatggactaaaataa 33806656  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 31132572 - 31132676
Alignment:
Q  135 tagtctataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggacta 234  Q
    |||||||||||||||||||||||||| |||||||  || || ||||||| |  ||||||||| |||||||||||| |  | || |||||||||  |||||    
T  31132572 tagtctataaaattactaacaaaagaggcactagagatatg-ttgcaatctcaatacatttatggactatagtgatagtgtctcacacattcatagacta 31132670  T
Q  235 aaataa 240  Q
    ||||||    
T  31132671 aaataa 31132676  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 43461169 - 43461129
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtgaca 211  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  43461169 atgtgtttgcaattttgatacatttagggaccatagtgaca 43461129  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 8877214 - 8877268
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacattta 196  Q
    ||||||||||||||||| ||  ||||| ||||||||||||||||| ||||||||||    
T  8877214 ataaaattactaacaaa-gagacactatgaatgtgtttgcaatttcgatacattta 8877268  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 26559507 - 26559579
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaac 213  Q
    ||||||||||||||||| ||  ||||||| | || |||| |||||||||| ||| |||||| | |||||||||    
T  26559507 ataaaattactaacaaacgacacactagggacgtttttgaaattttgataaattcaaggacaacagtgacaac 26559579  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 51889827 - 51889775
Alignment:
Q  176 tttgcaattttgatacatttaaggactatagtgacaacgccttacacattcag 228  Q
    |||| |||||||||||||| || |||||| ||||| || ||||||||||||||    
T  51889827 tttggaattttgatacattgaaagactattgtgactactccttacacattcag 51889775  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 22566490 - 22566428
Alignment:
Q  177 ttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaata 239  Q
    ||||| ||| |||| ||| |||||||||| ||||||| ||| |||||||||||||||||||||    
T  22566490 ttgcactttcgatatattcaaggactataatgacaacacctcacacattcagggactaaaata 22566428  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 25021089 - 25021015
Alignment:
Q  171 atgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaataattgtt 245  Q
    ||||| |||||||||||||||||| | |||||||| ||||||| ||| ||| ||| |||||| ||||||| ||||    
T  25021089 atgtgcttgcaattttgatacattcagggactataatgacaacacctcacatatttagggaccaaaataagtgtt 25021015  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 22727590 - 22727496
Alignment:
Q  141 ataaaattactaacaaaagaagcactaggaatgtgtttgcaattttgatacatttaaggactatagtgacaacgccttacacattcagggactaaaat 238  Q
    ||||||||||||||||||||  ||| |   ||||||||||||| | ||||||||||  |||||||||||||| |||| | | ||||| |||| |||||    
T  22727590 ataaaattactaacaaaagagacacaa---atgtgtttgcaatatcgatacatttagtgactatagtgacaatgcctcatatattcaaggaccaaaat 22727496  T

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