View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11754_low_8 (Length: 321)
Name: NF11754_low_8
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 36285846 - 36286143
Alignment:
| Q |
19 |
tggtgaaattgtcttggctcgtgagatgtttgatgaaatgcctcaaagggatgttgttcgttgtaatgctattatgatcgatgggtaagggaaaaatggg |
118 |
Q |
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| T |
36285846 |
tggtgaaattgtcttggcccgtgaggtgtttgatgaaatgcctgaaagggatgttgttccttgtaatgctatgatgatcgatgtgtaagggaaaaatggg |
36285945 |
T |
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| Q |
119 |
aaatgtgagc---ctgccgaggaggtttttatggctatgagtgtaagagatgtggttacatggacatatatgannnnnnnnnnnnnnnnnnnaatcatca |
215 |
Q |
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| T |
36285946 |
aaatgtgagcctgctgccgatgaggtttttatggctatgagtgtaagagatgtggttacatggacatatatga--tttttgtttttgtttttaatcatca |
36286043 |
T |
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| Q |
216 |
actaatgaaaatgtttgcggtctatgaagcacatgcacggacgcgacacacacatcaacaccaatagtaattttataaaggcttaattgcacttttggcc |
315 |
Q |
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| T |
36286044 |
actaatgaaaatgtttgcggtctatgaagcacatgcacggacgcgacacacacatcaacaccaatagtaattttataaaggcttaattgcacttttggcc |
36286143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Complemental strand, 37343998 - 37343970
Alignment:
| Q |
293 |
aaggcttaattgcacttttggcctcctat |
321 |
Q |
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| T |
37343998 |
aaggcttaattgcacttttggcctcctat |
37343970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 2565404 - 2565374
Alignment:
| Q |
283 |
taattttataaaggcttaattgcacttttgg |
313 |
Q |
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| T |
2565404 |
taattttataaaggcttaattgcacttttgg |
2565374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Complemental strand, 11307391 - 11307363
Alignment:
| Q |
293 |
aaggcttaattgcacttttggcctcctat |
321 |
Q |
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| T |
11307391 |
aaggcttaattgcacttttggcctcctat |
11307363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 53568289 - 53568319
Alignment:
| Q |
291 |
taaaggcttaattgcacttttggcctcctat |
321 |
Q |
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| T |
53568289 |
taaaggcttaattgcacttttggcctcctat |
53568319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 23356682 - 23356711
Alignment:
| Q |
284 |
aattttataaaggcttaattgcacttttgg |
313 |
Q |
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| T |
23356682 |
aattttataaaggcttaattgcacttttgg |
23356711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 22472016 - 22471984
Alignment:
| Q |
289 |
tataaaggcttaattgcacttttggcctcctat |
321 |
Q |
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| T |
22472016 |
tataaaggcttaattgcacttttgacctcctat |
22471984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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