View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11754_low_9 (Length: 271)
Name: NF11754_low_9
Description: NF11754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11754_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 13870808 - 13871067
Alignment:
| Q |
1 |
gttgagctttcttgtccctctccaaaacttcaaggaccgtcttataaagctgcggttgtgtcttcatgaagtgcaatgacctcattgagttcagaccaga |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13870808 |
gttgagctttcttggccctctctaaaacttcaaggaccgtcttataaagctgcggttgtgtcttcatgaagtccaatgacctcattgagttcagaccaga |
13870907 |
T |
|
| Q |
101 |
caatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaagaccagtcccgagactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13870908 |
caatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaaggccagtcccgagactt |
13871007 |
T |
|
| Q |
201 |
ttccatagaaggctcttgagaattgacatgatttgaagccacatcacttcatccgtctct |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871008 |
ttccatagaaggctcttgagaattaacatgatttgaagccacatcacttcatccgtctct |
13871067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 14010933 - 14011192
Alignment:
| Q |
1 |
gttgagctttcttgtccctctccaaaacttcaaggaccgtcttataaagctgcggttgtgtcttcatgaagtgcaatgacctcattgagttcagaccaga |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14010933 |
gttgagctttcttggccctctctaaaacttcaaggaccgtcttataaagctgcggttgtgtcttcatgaagtccaatgacctcattgagttcagaccaga |
14011032 |
T |
|
| Q |
101 |
caatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaagaccagtcccgagactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14011033 |
caatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaaggccagtcccgagactt |
14011132 |
T |
|
| Q |
201 |
ttccatagaaggctcttgagaattgacatgatttgaagccacatcacttcatccgtctct |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011133 |
ttccatagaaggctcttgagaattaacatgatttgaagccacatcacttcatccgtctct |
14011192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University