View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_high_11 (Length: 386)

Name: NF11755_high_11
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_high_11
NF11755_high_11
[»] chr4 (6 HSPs)
chr4 (1-199)||(250283-250481)
chr4 (193-226)||(10118911-10118944)
chr4 (199-231)||(2501884-2501916)
chr4 (199-231)||(31557609-31557641)
chr4 (199-231)||(46096474-46096506)
chr4 (199-231)||(53827249-53827281)
[»] chr3 (8 HSPs)
chr3 (262-368)||(34306166-34306272)
chr3 (196-234)||(35873527-35873565)
chr3 (191-240)||(43264372-43264421)
chr3 (199-237)||(10138141-10138179)
chr3 (195-236)||(3734446-3734487)
chr3 (199-240)||(10176771-10176812)
chr3 (199-231)||(34212143-34212175)
chr3 (199-231)||(52352977-52353009)
[»] chr7 (6 HSPs)
chr7 (262-368)||(33830164-33830270)
chr7 (199-240)||(17034955-17034996)
chr7 (290-368)||(37504189-37504268)
chr7 (199-231)||(25416434-25416466)
chr7 (196-236)||(41202968-41203008)
chr7 (199-231)||(47230767-47230799)
[»] chr6 (6 HSPs)
chr6 (261-368)||(34113080-34113188)
chr6 (303-368)||(12470661-12470726)
chr6 (199-237)||(20820291-20820329)
chr6 (199-240)||(16855881-16855922)
chr6 (260-297)||(33496928-33496965)
chr6 (199-231)||(32547838-32547870)
[»] chr2 (5 HSPs)
chr2 (262-298)||(27910020-27910056)
chr2 (199-240)||(22985460-22985501)
chr2 (201-241)||(37781379-37781419)
chr2 (199-231)||(7570950-7570982)
chr2 (199-231)||(16665545-16665577)
[»] chr8 (5 HSPs)
chr8 (197-240)||(21560320-21560363)
chr8 (260-292)||(4467115-4467147)
chr8 (197-236)||(4141327-4141366)
chr8 (199-231)||(28846189-28846221)
chr8 (262-298)||(35700321-35700357)
[»] chr1 (3 HSPs)
chr1 (198-231)||(13789480-13789513)
chr1 (199-231)||(25804630-25804662)
chr1 (262-298)||(32864396-32864432)
[»] scaffold0564 (1 HSPs)
scaffold0564 (199-231)||(4124-4156)
[»] scaffold0316 (1 HSPs)
scaffold0316 (199-231)||(3173-3205)
[»] scaffold0047 (1 HSPs)
scaffold0047 (208-240)||(49524-49556)
[»] chr5 (3 HSPs)
chr5 (262-298)||(15007004-15007040)
chr5 (262-298)||(17193510-17193546)
chr5 (199-231)||(37010439-37010471)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 250481 - 250283
Alignment:
Q  1 ttatgatttatctgtattttttaacccggttatgcttaagttgaacgttgttaatggtacaataaaaggctgtgcatactgatacctttgcaagaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  250481 ttatgatttatctgtattttttaacccggttatgctttagttgaacgttgttaatggtacaataaaaggctgtgcatactgatacctttgcaagaaatat 250382  T
Q  101 tgatatctttcgcagaattccgattttagaataaatggtgtgcaagcaaactgatcttagccaagagagcacctaaagtgcaatgctttaatgaataaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  250381 tgatatctttcgcagaattccgattttagaataaatggtgtgcaagcaaactgatcttagccaagagagcacctaaagtgcaatgctttaatgaataaa 250283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 10118944 - 10118911
Alignment:
Q  193 gaataaactaggtgtataacccgtgcgttgcacg 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  10118944 gaataaactaggtatataacccgtgcgttgcacg 10118911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 2501884 - 2501916
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  2501884 actaggtatataacccgtgcgttgcacgggttt 2501916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 31557641 - 31557609
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  31557641 actaggtatataacccgtgcgttgcacgggttt 31557609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 46096506 - 46096474
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  46096506 actaggtatataacccgtgcgttgcacgggttt 46096474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 53827249 - 53827281
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  53827249 actaggtatataacccgtgcgttgcacgggttt 53827281  T

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Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 262 - 368
Target Start/End: Original strand, 34306166 - 34306272
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaattttttaacttcgataaataaatttcatttcattaatcaaggtccaaacacacatagtaagca 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34306166 cagtggcgttgccaggaccctagagcagggggttcaattttttaacttcgataaataaatttcatttcattaatcaaggtccaaacgcacatagtaagca 34306265  T
Q  362 actctat 368  Q
    |||||||    
T  34306266 actctat 34306272  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 35873565 - 35873527
Alignment:
Q  196 taaactaggtgtataacccgtgcgttgcacgggtttcat 234  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  35873565 taaactaggtatataacccgtgcgttgcacgggtttcat 35873527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 43264372 - 43264421
Alignment:
Q  191 atgaataaactaggtgtataacccgtgcgttgcacgggtttcattagaat 240  Q
    |||| |||||||||| ||||||||||| ||||||||||||| ||||||||    
T  43264372 atgagtaaactaggtatataacccgtgggttgcacgggtttgattagaat 43264421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 10138141 - 10138179
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggtttcattag 237  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  10138141 actaggtatataacccgtgcgttgcacgggttttattag 10138179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 3734446 - 3734487
Alignment:
Q  195 ataaactaggtgtataacccgtgcgttgcacgggtttcatta 236  Q
    |||||| |||| |||||||||||||||||| |||||||||||    
T  3734446 ataaacgaggtatataacccgtgcgttgcatgggtttcatta 3734487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 10176771 - 10176812
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggtttcattagaat 240  Q
    ||||||| |||||||||||||||||||||||||  |||||||    
T  10176771 actaggtttataacccgtgcgttgcacgggtttatttagaat 10176812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 34212175 - 34212143
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  34212175 actaggtatataacccgtgcgttgcacgggttt 34212143  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 52353009 - 52352977
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  52353009 actaggtatataacccgtgcgttgcacgggttt 52352977  T

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Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 262 - 368
Target Start/End: Complemental strand, 33830270 - 33830164
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaattttttaacttcgataaataaatttcatttcattaatcaaggtccaaacacacatagtaagca 361  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33830270 cagtggcgttgccaggatcctagagtagggggttcaattttttaacttcgataaataaatttcatttcattaatcaaggtccaaacacacatagtaagca 33830171  T
Q  362 actctat 368  Q
    |||||||    
T  33830170 actctat 33830164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 17034996 - 17034955
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggtttcattagaat 240  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  17034996 actaggtatataacccgtgcgttgcacgggtttgattagaat 17034955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 37504268 - 37504189
Alignment:
Q  290 ggggttcaatttttta-acttcgataaataaatttcatttcattaatcaaggtccaaacac---acatagtaagcaactctat 368  Q
    |||||||||||||||  |||||||| |||||||   |||||||| ||| ||||||||||||   |||||||||||||||||||    
T  37504268 ggggttcaattttttttacttcgattaataaat---atttcattgatctaggtccaaacacacaacatagtaagcaactctat 37504189  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 25416434 - 25416466
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  25416434 actaggtatataacccgtgcgttgcacgggttt 25416466  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 41202968 - 41203008
Alignment:
Q  196 taaactaggtgtataacccgtgcgttgcacgggtttcatta 236  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  41202968 taaactaggtatataacccgtgcgttgcacggatttgatta 41203008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 47230767 - 47230799
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  47230767 actaggtatataacccgtgcgttgcacgggttt 47230799  T

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Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 34113188 - 34113080
Alignment:
Q  261 ccagtggcgttgccaggaccctagagcagggggttcaatttttt-aacttcgataaataaatttcatttcattaatcaaggtccaaacacacatagtaag 359  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  34113188 ccagtggcgttgccaggaccctagagtagggggttcaatttttttaacttcaataaataaatttcatttcattaatttaggtccaaacacacatattaag 34113089  T
Q  360 caactctat 368  Q
    |||||||||    
T  34113088 caactctat 34113080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 12470726 - 12470661
Alignment:
Q  303 ttaacttcgataaataaatttcatttcattaatcaaggtccaaacacacatagtaagcaactctat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12470726 ttaacttcgataaataaatttcatttcattaatcaaggtccaaacacacatagtaagcaactctat 12470661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 20820329 - 20820291
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggtttcattag 237  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  20820329 actaggtatataacccgtgcgttgcacgggttttattag 20820291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 16855922 - 16855881
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggtttcattagaat 240  Q
    ||||||| |||||||||||||||||||||||||  |||||||    
T  16855922 actaggtttataacccgtgcgttgcacgggtttatttagaat 16855881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 33496965 - 33496928
Alignment:
Q  260 accagtggcgttgccaggaccctagagcagggggttca 297  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  33496965 accagtggcgttgccaggaacctggagcagggggttca 33496928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 32547870 - 32547838
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  32547870 actaggtatataacccgtgcgttgcacgggttt 32547838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 27910020 - 27910056
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaa 298  Q
    |||||||||||||||||||||||||||||||||||||    
T  27910020 cagtggcgttgccaggaccctagagcagggggttcaa 27910056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 22985460 - 22985501
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggtttcattagaat 240  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  22985460 actaggtatataacccgtgcgttgcacgggtttgattagaat 22985501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 37781419 - 37781379
Alignment:
Q  201 taggtgtataacccgtgcgttgcacgggtttcattagaatt 241  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  37781419 taggtatataacccgtgcgttgcacgggtttgattagaatt 37781379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 7570950 - 7570982
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  7570950 actaggtatataacccgtgcgttgcacgggttt 7570982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 16665545 - 16665577
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  16665545 actaggtatataacccgtgcgttgcacgggttt 16665577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 21560320 - 21560363
Alignment:
Q  197 aaactaggtgtataacccgtgcgttgcacgggtttcattagaat 240  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  21560320 aaactaggtatataacccgtgcgttgcacgggtttgattagaat 21560363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 4467147 - 4467115
Alignment:
Q  260 accagtggcgttgccaggaccctagagcagggg 292  Q
    |||||||||||||||||||||||||||||||||    
T  4467147 accagtggcgttgccaggaccctagagcagggg 4467115  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 4141366 - 4141327
Alignment:
Q  197 aaactaggtgtataacccgtgcgttgcacgggtttcatta 236  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  4141366 aaactaggtatataacccgtgcgttgcacgggtttgatta 4141327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 28846221 - 28846189
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  28846221 actaggtatataacccgtgcgttgcacgggttt 28846189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 35700321 - 35700357
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaa 298  Q
    ||||||||||||||||||||| || ||||||||||||    
T  35700321 cagtggcgttgccaggaccctggaccagggggttcaa 35700357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 13789513 - 13789480
Alignment:
Q  198 aactaggtgtataacccgtgcgttgcacgggttt 231  Q
    |||||||| |||||||||||||||||||||||||    
T  13789513 aactaggtatataacccgtgcgttgcacgggttt 13789480  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 25804630 - 25804662
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  25804630 actaggtatataacccgtgcgttgcacgggttt 25804662  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 32864432 - 32864396
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaa 298  Q
    ||||||||||||||||||||| || ||||||||||||    
T  32864432 cagtggcgttgccaggaccctggaccagggggttcaa 32864396  T

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Target: scaffold0564 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 4156 - 4124
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  4156 actaggtatataacccgtgcgttgcacgggttt 4124  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 3173 - 3205
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  3173 actaggtatataacccgtgcgttgcacgggttt 3205  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 49556 - 49524
Alignment:
Q  208 ataacccgtgcgttgcacgggtttcattagaat 240  Q
    |||||||||||||||||||||||| ||||||||    
T  49556 ataacccgtgcgttgcacgggtttgattagaat 49524  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 15007004 - 15007040
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaa 298  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  15007004 cagtagcgttgccaggaccctaaagcagggggttcaa 15007040  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 17193510 - 17193546
Alignment:
Q  262 cagtggcgttgccaggaccctagagcagggggttcaa 298  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  17193510 cagtggcgttgctaggaccctagatcagggggttcaa 17193546  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 37010471 - 37010439
Alignment:
Q  199 actaggtgtataacccgtgcgttgcacgggttt 231  Q
    ||||||| |||||||||||||||||||||||||    
T  37010471 actaggtatataacccgtgcgttgcacgggttt 37010439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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