View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_high_12 (Length: 386)

Name: NF11755_high_12
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_high_12
NF11755_high_12
[»] chr7 (6 HSPs)
chr7 (117-203)||(32718837-32718923)
chr7 (286-367)||(32718662-32718743)
chr7 (15-75)||(32718968-32719028)
chr7 (286-363)||(32715288-32715365)
chr7 (118-167)||(32715465-32715514)
chr7 (290-367)||(32710062-32710139)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 32718923 - 32718837
Alignment:
Q  117 cttctcaatatacagaactcgatggaacaatagtggcaataaataatgataatgatatatgtctaatacaaggaaatattagatatg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32718923 cttctcaatatacagaactcgatggaacaatagtggcaataaataatgataatgatatatgtctaatacaaggaaatattagatatg 32718837  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 32718743 - 32718662
Alignment:
Q  286 gatgaaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcagtgcaatagttataa 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32718743 gatgaaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcggtgcaatagttataa 32718662  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 32719028 - 32718968
Alignment:
Q  15 caacacagacctatgcaaattacaactggtactttagcacttgccattattagcacagccg 75  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32719028 caacacagacctatgcaaattacaactggttctttagcacttgccattattagcacagccg 32718968  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 32715365 - 32715288
Alignment:
Q  286 gatgaaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcagtgcaatagtt 363  Q
    |||||||||||| |||||  |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||    
T  32715365 gatgaaaatttaaatgtcctggtctcttttgcattctggtggaacttgaggcaaacgttttctatcagtgcaatagtt 32715288  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 32715514 - 32715465
Alignment:
Q  118 ttctcaatatacagaactcgatggaacaatagtggcaataaataatgata 167  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32715514 ttctcaatttacagaactcgatggaacaataatggcaataaataatgata 32715465  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 32710139 - 32710062
Alignment:
Q  290 aaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcagtgcaatagttataa 367  Q
    |||||||| ||||||||||||||| | |||||||| || || ||||| |||||| | |||||||| || || ||||||    
T  32710139 aaaatttaaatgtcacggtctcttctacattcagggggtatctgagggaaacgtgttctatcagtacagtaattataa 32710062  T

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