View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11755_high_13 (Length: 371)
Name: NF11755_high_13
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 45068435 - 45068776
Alignment:
| Q |
14 |
agatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttgaataacaataaaacaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45068435 |
agatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttgaacaacaataaaacaaa |
45068534 |
T |
|
| Q |
114 |
atcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaaccaacatagtactgatcaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068535 |
atcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaaccaacatagtactgatcaat |
45068634 |
T |
|
| Q |
214 |
ggttttcaaccatccaacatcatcatgactatgagggactaggtgaacattgagcttcccaggaacaatggttgagttagtattgtatcttatataattt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068635 |
ggttttcaaccatccaacatcatcatgactatgagggactaagtgaacattgagcttcccaggaacaatggttgagttagtattgtatcttatataattt |
45068734 |
T |
|
| Q |
314 |
gattcagaggaagtgatacacacaacaaacaaaagtaaaaac |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068735 |
gattcagaggaagtgatacacacaacaaacaaaagtaaaaac |
45068776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 3737997 - 3738343
Alignment:
| Q |
14 |
agatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacattttgaacgcatgctccctgcattttgaataacaataaaacaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || || | |||||| |
|
|
| T |
3737997 |
agatgaatttgcgattcttgtccgccaacaacgctggtataagggaatcaagcacactttgaacgcatgctctctgcattcacaacaatggttaaacaac |
3738096 |
T |
|
| Q |
114 |
atcaaaatcatgcaattgaattgagttaaagagagtgtccttagaagagtgaatgaataacctgaatggtgttgttggaaccaacatagtactgatcaat |
213 |
Q |
| |
|
|| ||||||||| |||| |||| | |||||| | |||| ||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3738097 |
ataaaaatcatggaattcaattaaattaaagtgtgtgtg----gaagaaaaagtgaatgacctgaatggtgtggttggaaccaacatagtactgatcaat |
3738192 |
T |
|
| Q |
214 |
ggttttcaaccatccaacatc-atcatgactatgagggactaggtgaacattgagcttcccaggaacaatgg--------ttgagttagtattgtatctt |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3738193 |
ggttttcaaccatccaacatcaatcatgaccatgagggaccaagtcaacattgagcttcccaggaacaatggttgagtacttgagttagtattgtatctt |
3738292 |
T |
|
| Q |
305 |
atataatttgattcagaggaagtgatacacacaacaaacaaaagtaaaaac |
355 |
Q |
| |
|
|| |||||||||||||| ||| | ||||||||||| || || ||||||||| |
|
|
| T |
3738293 |
atgtaatttgattcagaagaaataatacacacaaccaagaagagtaaaaac |
3738343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 32386495 - 32386585
Alignment:
| Q |
185 |
ttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatgactatgagggactaggtgaacattgagcttcccag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||| || || ||||||||||||||||||| |
|
|
| T |
32386495 |
ttgttggaaccaacatagtactgatcaacagtcttcaaccacccaacatcatcatgagtatgagcaaccagatgaacattgagcttcccag |
32386585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 32400666 - 32400728
Alignment:
| Q |
178 |
aatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatg |
240 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||| ||| || | ||| |||||||||||||| |
|
|
| T |
32400666 |
aatggagttgttggatccaacgtagtactgatcaacggtcttaagccaaccaacatcatcatg |
32400728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 31848455 - 31848385
Alignment:
| Q |
170 |
ataacctgaatggtgttgttggaaccaacatagtactgatcaatggttttcaaccatccaacatcatcatg |
240 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||| || || | ||| |||||||||||||| |
|
|
| T |
31848455 |
ataacctgaatggaattgttggagccaacatagtattgatcaacagtcttaagccaaccaacatcatcatg |
31848385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University