View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_high_20 (Length: 305)
Name: NF11755_high_20
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 3123586 - 3123322
Alignment:
| Q |
18 |
gtttgcagtgttgttggagcagtaataatatcgataggattttatgctgttttatgggggaaatccaaagaagaatcgaatgatgactttgacataggta |
117 |
Q |
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| T |
3123586 |
gtttgcagtgttgttggagcagtaataatatcgataggattttatgctgttttatgggggaaatccaaagaagaatcgaatgatgagtttgacataggta |
3123487 |
T |
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| Q |
118 |
gagttccacttccatcaaatagcaagactcctttgttgaaggtctcaaatgtgatagattaggaatcagacataatgattcttgaagatgtaaatgataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3123486 |
gagttccacttccatcaaatagcaagactcctttgttgaaggtctcaaatgtgatagagtaggaatcagacataatgattcttgaagatgtaaatgataa |
3123387 |
T |
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| Q |
218 |
atacagttgtagttgacaa-ttaagcttatttctttggtacgctttcaacattttgtacatcaat |
281 |
Q |
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||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3123386 |
atatagttgtagttgataatttaagcttatttctttggtacgctttcaacattttgtacatcaat |
3123322 |
T |
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