View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_high_21 (Length: 295)
Name: NF11755_high_21
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 48437541 - 48437272
Alignment:
| Q |
9 |
tgaaaaaacgaggatattatatatcttactaatgtttacctttgctcttggttaatagactgtttcagaaaagaccaaggagagtgaaggagactcatgg |
108 |
Q |
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| T |
48437541 |
tgaaaaaacgaggatattatatatcttactaatgtttacctttgctcttggttaatagactgtttcagaaaagaccaaggagagtgaaggagactcatgg |
48437442 |
T |
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| Q |
109 |
gagtttttgggtctcatgccactctttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48437441 |
gagtttttgggtctcatgccactctttgaccctccaaggcatgatagtgctgagaccattcgacgtgctcttgaccttggtgttaatgttaagatgatca |
48437342 |
T |
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| Q |
209 |
ctggtgatcaacttgccattggaaaagaaaccggtcgcagacttggaatgggcaccaacatgtacccttc |
278 |
Q |
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| T |
48437341 |
ctggtgatcaacttgccattggaaaagaaaccggtcgcagacttggaatgggcaccaacatgtacccttc |
48437272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 53076075 - 53075990
Alignment:
| Q |
128 |
cactctttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggt |
213 |
Q |
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| T |
53076075 |
cactgtttgacccacctaggcatgacagtgctgaaactattcggagagctcttcatcttggtgtcaatgttaagatgattactggt |
53075990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 65 - 278
Target Start/End: Complemental strand, 21981198 - 21980985
Alignment:
| Q |
65 |
agactgtttcagaaaagaccaaggagagtgaaggagactcatgggagtttttgggtctcatgccactctttgaccctccaaggcatgatagtgctgagac |
164 |
Q |
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| T |
21981198 |
agactgtttcagaaaagaccaaggagagtgcaggagaaccatgggtgttcttgggtctcttacccctctttgacccgcctagacatgacagtgctgagac |
21981099 |
T |
|
| Q |
165 |
cattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggtgatcaacttgccattggaaaagaaaccggtcgcagacttggaatgggcacc |
264 |
Q |
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||||| | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
21981098 |
tattcgtcgcgctcttgacctcggtgtcaatgttaagatgatcactggcgatcaacttgccattggaaaagaaactggtcgcagacttggaatgggaacc |
21980999 |
T |
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| Q |
265 |
aacatgtacccttc |
278 |
Q |
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|||||||||||||| |
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| T |
21980998 |
aacatgtacccttc |
21980985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 15868445 - 15868518
Alignment:
| Q |
133 |
tttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgat |
206 |
Q |
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| T |
15868445 |
tttgatcctcctaggcatgacagtgctgaaaccattagaagagctcttaatcttggtgtaaatgttaagatgat |
15868518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 1497515 - 1497435
Alignment:
| Q |
133 |
tttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggt |
213 |
Q |
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||||| ||||||||||||||||||||||| || ||| || | || ||| |||||||||| |||||||||||||| |||||| |
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| T |
1497515 |
tttgatcctccaaggcatgatagtgctgaaacaattagaagagcacttaaccttggtgtgaatgttaagatgattactggt |
1497435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 1461866 - 1461946
Alignment:
| Q |
133 |
tttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggt |
213 |
Q |
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||||| ||||| || |||||||||||||| || ||| || | |||||||| |||||||| ||||| |||||||| |||||| |
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| T |
1461866 |
tttgatcctcctagacatgatagtgctgaaacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggt |
1461946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 28626592 - 28626670
Alignment:
| Q |
135 |
tgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggt |
213 |
Q |
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| T |
28626592 |
tgacccacctaggcatgacagtgctgaaactattcggagagctcttcatcttggtgtcaatgttaagatgattactggt |
28626670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 50275673 - 50275753
Alignment:
| Q |
133 |
tttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggt |
213 |
Q |
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||||| ||||| ||||||||||||||||| ||||| | | ||||| |||||||||| |||||||||||||| |||||| |
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| T |
50275673 |
tttgatcctcctaggcatgatagtgctgaaaccatcacaagagctctgaaccttggtgtgaatgttaagatgattactggt |
50275753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 26789347 - 26789433
Alignment:
| Q |
127 |
ccactctttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgatcactggt |
213 |
Q |
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||||| ||||| ||||| ||||||||||||||||| || ||| | | ||||| || |||||||| ||||| |||||||| |||||| |
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| T |
26789347 |
ccactatttgatcctcctaggcatgatagtgctgaaactattaaaagagctctcgaacttggtgtgaatgtcaagatgattactggt |
26789433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 48663570 - 48663643
Alignment:
| Q |
133 |
tttgaccctccaaggcatgatagtgctgagaccattcgatgtgctcttgaccttggtgttaatgttaagatgat |
206 |
Q |
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| T |
48663570 |
tttgatccaccaagacatgatagtgccgagaccatccgaagagcacttaaccttggtgtttgtgttaagatgat |
48663643 |
T |
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