View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_high_26 (Length: 255)

Name: NF11755_high_26
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_high_26
NF11755_high_26
[»] chr4 (3 HSPs)
chr4 (9-211)||(8750773-8750975)
chr4 (15-215)||(13776220-13776420)
chr4 (63-215)||(13773970-13774122)
[»] chr3 (2 HSPs)
chr3 (15-215)||(4532905-4533105)
chr3 (63-215)||(4530654-4530806)
[»] chr7 (5 HSPs)
chr7 (112-215)||(21769272-21769375)
chr7 (15-215)||(8731388-8731588)
chr7 (63-163)||(18395146-18395246)
chr7 (71-120)||(24040414-24040463)
chr7 (63-215)||(28610453-28610605)
[»] chr1 (5 HSPs)
chr1 (15-215)||(10911123-10911323)
chr1 (63-163)||(13011565-13011665)
chr1 (63-215)||(10908927-10909079)
chr1 (129-198)||(4820969-4821038)
chr1 (129-198)||(4832769-4832838)
[»] chr2 (4 HSPs)
chr2 (15-145)||(42275820-42275950)
chr2 (11-179)||(39816242-39816419)
chr2 (63-163)||(42278062-42278162)
chr2 (9-82)||(31488901-31488974)
[»] chr5 (1 HSPs)
chr5 (20-82)||(22600657-22600719)
[»] chr8 (1 HSPs)
chr8 (9-82)||(36377559-36377632)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 8750975 - 8750773
Alignment:
Q  9 agaagaaaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgt 108  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  8750975 agaagaaaatattgactcggggacgagtctcttccaacccgaagaaaatgctaaagaatgatgaagaataatatagaatattatgacacttttaaaatgt 8750876  T
Q  109 ggaagaactttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagattataatatct 208  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8750875 ggaagaactttcaagatcactactgaatatagtcataataactaggagcgtcttaatatcgctataactttgtagcttcataaagtagattataatatct 8750776  T
Q  209 cta 211  Q
    |||    
T  8750775 cta 8750773  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 13776220 - 13776420
Alignment:
Q  15 aaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgtggaaga 114  Q
    |||| |||||||  |||||||||||||||||||| | || |||| || ||||| |||||||||||||||||| |||||  |||||| || |||| |||||    
T  13776220 aaatcttgactcgaggacgagtctcttccaacccggggagaatgatagagaattatggagaataatatagaacattatggaactttcaagatgtcgaaga 13776319  T
Q  115 actttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagattataatatctctagat 214  Q
    ||||||||||  ||||| |||||| |||||| | | ||||| |||||||  ||| ||| |||||| |||   |||||| |||||  ||  ||||||||||    
T  13776320 actttcaagaatattacaaaataatgtcatagtgattaggatcatcttagcatctctagaactttctaggcacatgaactagatattagaatctctagat 13776419  T
Q  215 a 215  Q
    |    
T  13776420 a 13776420  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 13773970 - 13774122
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||||||||||||||| |||||   ||||| || |||| |||||||||||||||  ||||| |||||| |||||| | | ||||| ||||||    
T  13773970 agaattatggagaataatatagaacattatgggactttcaagatgtcgaagaactttcaagaatattacaaaataatgtcatagtgattaggatcatctt 13774069  T
Q  163 aatatcgctataactttgtagcttcatgaagtagattataatatctctagata 215  Q
    |  ||| ||| |||||| |||   |||||| |||||  ||  |||||||||||    
T  13774070 agcatctctagaactttctaggcacatgaactagatattagaatctctagata 13774122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 4532905 - 4533105
Alignment:
Q  15 aaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgtggaaga 114  Q
    |||| |||||||  |||||||||||||||||||| | || |||| || ||||| |||||||||||||||||| |||||  |||||| || |||| |||||    
T  4532905 aaatcttgactcgaggacgagtctcttccaacccggggagaatgatagagaattatggagaataatatagaacattatggaactttcaagatgtcgaaga 4533004  T
Q  115 actttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagattataatatctctagat 214  Q
    ||||||||||  ||||| |||||| |||||| | | ||||| |||||||  ||| ||| |||||| |||   |||||| |||||  ||  ||||||||||    
T  4533005 actttcaagaatattacaaaataatgtcatagtgattaggatcatcttagcatctctagaactttctaggcacatgaactagatattagaatctctagat 4533104  T
Q  215 a 215  Q
    |    
T  4533105 a 4533105  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 4530654 - 4530806
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||||||||||||||| |||||  |||||| || |||| |||||||||||||||  ||||| |||||| ||| || | | ||||| ||||||    
T  4530654 agaattatggagaataatatagaacattatggaactttcaagatgtcgaagaactttcaagaatattacaaaataatgtcgtagtgattaggatcatctt 4530753  T
Q  163 aatatcgctataactttgtagcttcatgaagtagattataatatctctagata 215  Q
    |  ||| ||| |||||| |||   |||||| |||||  ||  |||||||||||    
T  4530754 agcatctctagaactttctaggcacatgaactagatattagaatctctagata 4530806  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 21769375 - 21769272
Alignment:
Q  112 agaactttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagattataatatctcta 211  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||||||||  || |||||| ||||| |||||| |||||  || ||||||||    
T  21769375 agaactttcaagaatactactaaataaagtcataataactaggagcatcttaatatccttagaactttctagctacatgaactagatattagtatctcta 21769276  T
Q  212 gata 215  Q
    ||||    
T  21769275 gata 21769272  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 8731588 - 8731388
Alignment:
Q  15 aaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgtggaaga 114  Q
    |||| |||||||  |||||||||||||||||||    || |||| || ||||| |||||||||||||||||| |||||  ||||||||| |||| |||||    
T  8731588 aaatcttgactcgaggacgagtctcttccaacctgtggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaaga 8731489  T
Q  115 actttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagattataatatctctagat 214  Q
    ||||||||||  ||||| |||||| |||||| | | ||||| |||||||  ||| ||| |||||| |||   |||||| |||||  ||  ||||||||||    
T  8731488 actttcaagaatattacaaaataatgtcatagtgattaggatcatcttagcatctctagaactttctaggcacatgaactagatattagaatctctagat 8731389  T
Q  215 a 215  Q
    |    
T  8731388 a 8731388  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 18395146 - 18395246
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||| ||||||||||| |||||  |||||| || |||| |||||||||||||||  ||||| ||||||||||||| | | ||||| ||||||    
T  18395146 agaattatggaggataatatagaacattatggaactttcaagatgtcgaagaactttcaagaatattacaaaataaagtcatagtgattaggatcatctt 18395245  T
Q  163 a 163  Q
    |    
T  18395246 a 18395246  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 24040414 - 24040463
Alignment:
Q  71 ggagaataatatagaatattataaaacttttaaaatgtggaagaactttc 120  Q
    ||||||| ||| |||||||||| |||||||||| ||||||||||||||||    
T  24040414 ggagaatcatagagaatattatgaaacttttaagatgtggaagaactttc 24040463  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 28610605 - 28610453
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||||| |||||| || |||||  |||||| || |||| ||||| ||||||| |  ||||| ||||||||||||| | | ||||| ||||||    
T  28610605 agaattatggagaagaatatataacattatggaactttcaagatgtcgaagagctttcaaaaatattacaaaataaagtcatagtgattaggatcatctt 28610506  T
Q  163 aatatcgctataactttgtagcttcatgaagtagattataatatctctagata 215  Q
    |  ||| ||| |||||| |||   |||||| |||||  ||  |||||||||||    
T  28610505 agcatctctagaactttctaggcacatgaactagatattagaatctctagata 28610453  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 10911123 - 10911323
Alignment:
Q  15 aaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgtggaaga 114  Q
    |||| |||||||  |||||||||||||||||||    || |||| || ||||| |||||||||||||||||| |||||  ||||||||| |||| |||||    
T  10911123 aaatcttgactcgaggacgagtctcttccaacctgtggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaaga 10911222  T
Q  115 actttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagattataatatctctagat 214  Q
    ||||||||||  ||||| |||||| |||||| | | ||||| |||||||  ||| ||| |||||| |||   |||||| |||||  ||  ||||||||||    
T  10911223 actttcaagaatattacaaaataatgtcatagtgattaggatcatcttagcatctctagaactttctaggcacatgaactagatattagaatctctagat 10911322  T
Q  215 a 215  Q
    |    
T  10911323 a 10911323  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 13011565 - 13011665
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||  ||||| ||||||||||||| | | ||||| ||||||    
T  13011565 agaattatggagaataatatagaacattatgaaacttttaagatgtcgaagaactttcaagaatattacaaaataaagtcatagtgattaggatcatctt 13011664  T
Q  163 a 163  Q
    |    
T  13011665 a 13011665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 10908927 - 10909079
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||||||||||||||| |||||  ||||||||| |||| |||||||||||||||  ||||| |||||| |||||| | | ||||| ||||||    
T  10908927 agaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaagaatattacaaaataatgtcatagtgattaggatcatctt 10909026  T
Q  163 aatatcgctataactttgtagcttcatgaagtagattataatatctctagata 215  Q
    |  ||| ||| |||||| |||   |||||| |||||  ||  |||||||||||    
T  10909027 agcatctctagaactttctaggcacatgaactagatattagaatctctagata 10909079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 4820969 - 4821038
Alignment:
Q  129 tactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagat 198  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||||| ||||| ||| || |||||    
T  4820969 tactaaataaagtcataataactaggagcatcttgatacctctagaactttttagctacataaactagat 4821038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 4832769 - 4832838
Alignment:
Q  129 tactaaataaagtcataataactaggagcatcttaatatcgctataactttgtagcttcatgaagtagat 198  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||||| ||||| ||| || |||||    
T  4832769 tactaaataaagtcataataactaggagcatcttgatacctctagaactttttagctacataaactagat 4832838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 42275950 - 42275820
Alignment:
Q  15 aaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgtggaaga 114  Q
    |||| |||||||  ||| ||||||||||||||||   || |||| || ||||| |||||||||||||||||| |||||  ||||||||| |||| |||||    
T  42275950 aaatcttgactcgaggatgagtctcttccaacccgtggagaatgatagagaattatggagaataatatagaacattatggaacttttaagatgtcgaaga 42275851  T
Q  115 actttcaagatcattactaaataaagtcata 145  Q
    ||||||||||  ||||| |||||| ||||||    
T  42275850 actttcaagaatattacaaaataatgtcata 42275820  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 39816419 - 39816242
Alignment:
Q  11 aagaaaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatatagaatattataaaacttttaaaatgtgg 110  Q
    |||||||| ||| |||  ||||||||||| |||||||| |||| |||| || | |||||||||||||||||||||| |||||  |||||| || ||||||    
T  39816419 aagaaaatcttgtctcgaggacgagtctcatccaacccggagagaatgatagaaaatgatggagaataatatagaacattatggaactttcaagatgtgg 39816320  T
Q  111 a---------agaactttcaagatcattactaaataaagtcataataactaggagcatcttaatatcgctataacttt 179  Q
    |         |||||||||||||  | |||||||||||||||| ||||||| |||||| || ||||| ||| ||||||    
T  39816319 agaatattttagaactttcaagaatactactaaataaagtcatgataactatgagcatttttatatctctagaacttt 39816242  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 42278162 - 42278062
Alignment:
Q  63 agaatgatggagaataatatagaatattataaaacttttaaaatgtggaagaactttcaagatcattactaaataaagtcataataactaggagcatctt 162  Q
    ||||| |||||||||||||||||| |||||  ||||||||| |||| |||||||||||||||  ||||| |||||| |||||| | | ||||| ||||||    
T  42278162 agaattatggagaataatatagaacattatggaacttttaagatgtcgaagaactttcaagaatattacaaaataatgtcatagtgattaggatcatctt 42278063  T
Q  163 a 163  Q
    |    
T  42278062 a 42278062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 31488901 - 31488974
Alignment:
Q  9 agaagaaaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatat 82  Q
    |||||||||  |||||||  |||||||||||||||||||| |||| |||| || |||||| || ||||||||||    
T  31488901 agaagaaaagcttgactcgaggacgagtctcttccaacccggagagaatgatagagaatggtgaagaataatat 31488974  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 22600657 - 22600719
Alignment:
Q  20 ttgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatat 82  Q
    |||||||  |||||||||||||||||||| | || |||| || ||||||||| ||||||||||    
T  22600657 ttgactcgaggacgagtctcttccaacccggggagaatgatagagaatgatgaagaataatat 22600719  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 36377632 - 36377559
Alignment:
Q  9 agaagaaaatattgactcagggacgagtctcttccaacccagagaaaatgctaaagaatgatggagaataatat 82  Q
    |||||||||  |||||||  |||||||||||||||||||| | || |||| || |||||| || ||||||||||    
T  36377632 agaagaaaagcttgactcgaggacgagtctcttccaacccggggagaatgatagagaatggtgaagaataatat 36377559  T

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