View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_high_3 (Length: 485)

Name: NF11755_high_3
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_high_3
NF11755_high_3
[»] chr5 (4 HSPs)
chr5 (1-279)||(7494444-7494722)
chr5 (238-278)||(6805965-6806005)
chr5 (241-278)||(1282978-1283015)
chr5 (237-278)||(42310849-42310890)
[»] chr2 (3 HSPs)
chr2 (1-272)||(26487039-26487310)
chr2 (237-278)||(42946476-42946517)
chr2 (234-278)||(26021915-26021959)
[»] chr1 (3 HSPs)
chr1 (1-278)||(38618793-38619057)
chr1 (234-278)||(3788435-3788479)
chr1 (234-278)||(4125421-4125465)
[»] chr3 (5 HSPs)
chr3 (1-279)||(37373067-37373331)
chr3 (151-279)||(37373810-37373938)
chr3 (117-147)||(37373928-37373958)
chr3 (234-278)||(50306527-50306571)
chr3 (238-278)||(52398323-52398363)
[»] scaffold0286 (1 HSPs)
scaffold0286 (389-482)||(19957-20051)
[»] chr6 (3 HSPs)
chr6 (389-482)||(2173992-2174086)
chr6 (385-480)||(2182506-2182601)
chr6 (409-480)||(2159475-2159546)
[»] chr4 (2 HSPs)
chr4 (236-279)||(5825333-5825376)
chr4 (234-278)||(24471830-24471874)
[»] chr8 (2 HSPs)
chr8 (234-280)||(1488490-1488536)
chr8 (184-256)||(511397-511469)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 7494722 - 7494444
Alignment:
Q  1 aattctaatctatagttttaatattagtatgagttatttacttgtttttggtaatatttggagatattaatgataatgtcaattttgtttttgggttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7494722 aattctaatctatagttttaatattagtatgagttatttacttgttttgggtaatatttggagatattaatgataatgtcaattttgtttttgggttgtt 7494623  T
Q  101 cagcagtttagtgaaaatgggtgaaagagggagatgagaagatgagttgtagaagatgagtggttggatatgataccgagtgtctataataaaaatgtgc 200  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7494622 tagcggtttagtgaaaatgggtgaaagagggagatgagaagatgagttgtagaagatgagtggttggatctgataccgagtgtctataataaaaatgtgc 7494523  T
Q  201 tcttcatttaatcaaaaggttttaaatacattgtcctatggtgggaaactctttcccattcccattctaaatgtcacct 279  Q
    ||||||||| || ||| ||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||| |||||    
T  7494522 tcttcatttgattaaagggttttaaatacattgttccatggtggaaaactctttcccattaccattctaaatgccacct 7494444  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 6805965 - 6806005
Alignment:
Q  238 atggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  6805965 atggtgggaaactctttccctttcccatgctaaatgtcacc 6806005  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 1282978 - 1283015
Alignment:
Q  241 gtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  1282978 gtgggaaactctttcccattcccaccctaaatgtcacc 1283015  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 42310890 - 42310849
Alignment:
Q  237 tatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    ||||||||||||||||||||||||||||  ||||||| ||||    
T  42310890 tatggtgggaaactctttcccattcccaccctaaatgccacc 42310849  T

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Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 26487310 - 26487039
Alignment:
Q  1 aattctaatctatagttttaatattagtatgagttatttacttgtttttggtaatatttggagatattaatgataatgtcaattttgtttttgggttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26487310 aattctaatctatagttttaatattagtatgagttatgtacttgttttgggtaatatttggagatattaatgataatgtcaattttatttttgggttgtt 26487211  T
Q  101 cagcagtttagtgaaaatgggtgaaagagggagatgagaagatgagttgtagaagatgagtggttggatatgataccgagtgtctataataaaaatgtgc 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  26487210 tagcagtttagtgaaaatgggtgaaagagggagatgagaagatgagttgtagaagatgagtggttggatctgataccgagtgtctataataaaaatgttc 26487111  T
Q  201 tcttcatttaatcaaaaggttttaaatacattgtcctatggtgggaaactctttcccattcccattctaaat 272  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||  ||||||||| |||||||||||||||||    
T  26487110 tcttcatttgatcaaagggtttgaaatacattgtcccatggtgaaaaactcttttccattcccattctaaat 26487039  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 42946476 - 42946517
Alignment:
Q  237 tatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    ||||||||||||||||||||||||||||  ||||||| ||||    
T  42946476 tatggtgggaaactctttcccattcccaccctaaatgccacc 42946517  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 26021915 - 26021959
Alignment:
Q  234 tcctatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||||||||||||||||||||| ||||||  ||||||| ||||    
T  26021915 tcctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

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Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 38618793 - 38619057
Alignment:
Q  1 aattctaatctatagttttaatattagtatgagttatttacttgtttttgg-taatatttggagatattaatgataatgtcaattttgtttttgggttgt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38618793 aattctaatctatagttttaatattagtatgagttatttacttgtttttgggtaatatttggagatattaatgataatgtcaattttatttttgggttgt 38618892  T
Q  100 tcagcagtttagtgaaaatgggtgaaagagggagatgagaagatgagttgtagaagatgagtggttggatatgataccgagtgtctataataaaaatgtg 199  Q
    | |||||||||||||||||||||||||||||||||||              ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38618893 ttagcagtttagtgaaaatgggtgaaagagggagatg--------------agaagatgagtggttggatctgataccgagtgtctataataaaaatgtg 38618978  T
Q  200 ctcttcatttaatcaaaaggttttaaatacattgtcctatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||    
T  38618979 ctcttcatttgatcaaagggttttaaatacattgtcccatggtggaaaactctttccccttcccattctaaatgccacc 38619057  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 3788479 - 3788435
Alignment:
Q  234 tcctatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||||||||||||||||||||| ||||||  ||||||| ||||    
T  3788479 tcctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 4125421 - 4125465
Alignment:
Q  234 tcctatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||| ||||||||||||||||||||||||  ||||||| ||||    
T  4125421 tcctatagtgggaaactctttcccattcccaccctaaatgccacc 4125465  T

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Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 37373331 - 37373067
Alignment:
Q  1 aattctaatctatagttttaatattagtatgagttatttacttgtttttggtaatatttggagatattaatgataatgtcaattttgtttttgggttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37373331 aattctaatctatagttttaatattagtatgagttatttacttgttttgggtaatatttagagatattaatgataatgtcaattttgtttttgggttgtt 37373232  T
Q  101 cagcagtttagtgaaaatgggtgaaagagggagatgagaagatgagttgtagaagatgagtggttggatatgataccgagtgtctataataaaaatgtgc 200  Q
     ||| ||||||||||||||||||||||||||||||||||||||              |||||||||||| ||||||||||| ||||||||||||||||||    
T  37373231 tagcggtttagtgaaaatgggtgaaagagggagatgagaagat--------------gagtggttggatctgataccgagtatctataataaaaatgtgc 37373146  T
Q  201 tcttcatttaatcaaaaggttttaaatacattgtcctatggtgggaaactctttcccattcccattctaaatgtcacct 279  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||    
T  37373145 tcttcatttgatcaaagggttttaaatacattgtcccatggtggaaaactctttcccattaccattctaaatgccacct 37373067  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 37373938 - 37373810
Alignment:
Q  151 agaagatgagtggttggatatgataccgagtgtctataataaaaatgtgctcttcatttaatcaaaaggttttaaatacattgtcctatggtgggaaact 250  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||    
T  37373938 agaagatgagtggttggatctgataccgagtgtctataataaaaatgtgctcttcatttgatcaaagggttttaaatacattgtcccatggtggaaaact 37373839  T
Q  251 ctttcccattcccattctaaatgtcacct 279  Q
    |||||||||| |||||||||||| |||||    
T  37373838 ctttcccattaccattctaaatgccacct 37373810  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 37373958 - 37373928
Alignment:
Q  117 atgggtgaaagagggagatgagaagatgagt 147  Q
    |||||||||||||||||||||||||||||||    
T  37373958 atgggtgaaagagggagatgagaagatgagt 37373928  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 50306527 - 50306571
Alignment:
Q  234 tcctatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||||||||||||||||||||| ||||||  ||||||| ||||    
T  50306527 tcctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 52398363 - 52398323
Alignment:
Q  238 atggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  52398363 atggtgggaaactctttcccttttccattctaaatggcacc 52398323  T

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Target: scaffold0286 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 389 - 482
Target Start/End: Complemental strand, 20051 - 19957
Alignment:
Q  389 acacgcttggtt-gaccatacttcttacctattactacccttcttggcaattgcactttcattgacatcaattttccaaagactgtacttcttct 482  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  20051 acacgcttggtttgactatacttcttacctattactacccttcttggcaattgcacttgcattgacatcaatttcccaaagactatacttcttct 19957  T

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Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 389 - 482
Target Start/End: Original strand, 2173992 - 2174086
Alignment:
Q  389 acacgcttggtt-gaccatacttcttacctattactacccttcttggcaattgcactttcattgacatcaattttccaaagactgtacttcttct 482  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  2173992 acacgcttggtttgactatacttcttacctattactacccttcttggcaattgcacttgcattgacatcaatttcccaaagactatacttcttct 2174086  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 385 - 480
Target Start/End: Complemental strand, 2182601 - 2182506
Alignment:
Q  385 gtagacacgcttggttgaccatacttcttacctattactacccttcttggcaattgcactttcattgacatcaattttccaaagactgtacttctt 480  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||| || |||||||||||||||||||||| ||||||||    
T  2182601 gtagacacgcttggttgactatacttcttacctattactccccttcctagcaattgcacttgcaatgacatcaattttccaaagactatacttctt 2182506  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 2159475 - 2159546
Alignment:
Q  409 ttcttacctattactacccttcttggcaattgcactttcattgacatcaattttccaaagactgtacttctt 480  Q
    |||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||||||| ||||||||    
T  2159475 ttcttacctattactacccttcttagcaattgcacttgcaatgacattaattttccaaagactatacttctt 2159546  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 5825376 - 5825333
Alignment:
Q  236 ctatggtgggaaactctttcccattcccattctaaatgtcacct 279  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  5825376 ctatggtgggaaactctttcccattcccaccctaaatgccacct 5825333  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 24471874 - 24471830
Alignment:
Q  234 tcctatggtgggaaactctttcccattcccattctaaatgtcacc 278  Q
    ||||||||||||||||||||| |||||||||  ||||||| ||||    
T  24471874 tcctatggtgggaaactcttttccattcccaccctaaatgccacc 24471830  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 1488490 - 1488536
Alignment:
Q  234 tcctatggtgggaaactctttcccattcccattctaaatgtcacctg 280  Q
    ||||||||||| |||||||||||| ||||||| ||||||| ||||||    
T  1488490 tcctatggtggaaaactctttccccttcccatcctaaatgccacctg 1488536  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 511397 - 511469
Alignment:
Q  184 ctataataaaaatgtgctcttcatttaatcaaaaggttttaaatacattgtcctatggtgggaaactctttcc 256  Q
    ||||||||||| | |||||||||||| ||| ||||||| |||||  | | ||||||| ||||||| |||||||    
T  511397 ctataataaaattatgctcttcatttgatccaaaggttataaatcaactttcctatgatgggaaattctttcc 511469  T

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