View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_high_32 (Length: 244)

Name: NF11755_high_32
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_high_32
NF11755_high_32
[»] chr1 (1 HSPs)
chr1 (18-244)||(38618520-38618744)
[»] chr5 (1 HSPs)
chr5 (18-244)||(7494771-7494995)
[»] chr3 (1 HSPs)
chr3 (18-244)||(37373380-37373604)
[»] chr2 (1 HSPs)
chr2 (18-244)||(26487359-26487583)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 38618520 - 38618744
Alignment:
Q  18 agagtggattttccaatgactaattagcacaatataatgtttaccatccatggccggtacctccatttccgacgacctttttatggtggctttgttcagt 117  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  38618520 agagtggattttccaatgactaattagcacaaga--atgtttaccatccatggccggtacctccatttccggcgacctttttctggtggctttgttcagt 38618617  T
Q  118 cccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtgaccacaggagccttcgttggctgtgatcgtcagaaaaattctccccgg 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  38618618 cccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcggaaaaattctccccgg 38618717  T
Q  218 aatctcgccgacgacacatttggaatt 244  Q
    |||||||||| ||||||||||||||||    
T  38618718 aatctcgccggcgacacatttggaatt 38618744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 7494995 - 7494771
Alignment:
Q  18 agagtggattttccaatgactaattagcacaatataatgtttaccatccatggccggtacctccatttccgacgacctttttatggtggctttgttcagt 117  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||| | |||||||| ||| |||||||||||||    
T  7494995 agagtggattttccaatgactaattagcacaaga--atgtttaccatccatgaccggtacctccatttccggcaacctttttctggcggctttgttcagt 7494898  T
Q  118 cccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtgaccacaggagccttcgttggctgtgatcgtcagaaaaattctccccgg 217  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  7494897 cccttgcaacttagatccattcgtttttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcagaaaaattctccctgg 7494798  T
Q  218 aatctcgccgacgacacatttggaatt 244  Q
    |||||||||| ||||||||||||||||    
T  7494797 aatctcgccggcgacacatttggaatt 7494771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 37373604 - 37373380
Alignment:
Q  18 agagtggattttccaatgactaattagcacaatataatgtttaccatccatggccggtacctccatttccgacgacctttttatggtggctttgttcagt 117  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||    
T  37373604 agagtggattttccaatgactaattagcacaaga--atgtttaccatccatgaccggtacctccatttccggcgacctttttctggcggctttgttcagt 37373507  T
Q  118 cccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtgaccacaggagccttcgttggctgtgatcgtcagaaaaattctccccgg 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37373506 cccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcagaaaaattctccccgg 37373407  T
Q  218 aatctcgccgacgacacatttggaatt 244  Q
    ||||||| ||  |||||||||| ||||    
T  37373406 aatctcgtcggtgacacatttgaaatt 37373380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 26487583 - 26487359
Alignment:
Q  18 agagtggattttccaatgactaattagcacaatataatgtttaccatccatggccggtacctccatttccgacgacctttttatggtggctttgttcagt 117  Q
    |||||||||||| ||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||  |||||||||| ||| |||||||||||||    
T  26487583 agagtggatttttcaatgactaatcagcacaaga--atgtttaccatccatggccggtacctccatttccagcgacctttttctggcggctttgttcagt 26487486  T
Q  118 cccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtgaccacaggagccttcgttggctgtgatcgtcagaaaaattctccccgg 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||     
T  26487485 cccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcagaaaaattctctccga 26487386  T
Q  218 aatctcgccgacgacacatttggaatt 244  Q
    |||||||||| ||||||||||||||||    
T  26487385 aatctcgccggcgacacatttggaatt 26487359  T

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