View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11755_high_35 (Length: 238)
Name: NF11755_high_35
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_high_35 |
 | |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14789760 - 14789538
Alignment:
| Q |
1 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14789760 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtccaagtaggaaacttatggtggattgtaatgatgaaggtattttgttt |
14789661 |
T |
|
| Q |
101 |
attgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14789660 |
attgaagctgatgctgatgttactcttgaacaatttggtgaagatcttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
14789561 |
T |
|
| Q |
201 |
cagttgtgcttaacactccattg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
14789560 |
cagttgtgcttaacactccattg |
14789538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14880203 - 14879981
Alignment:
| Q |
1 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgttt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | || |||||| |||||||| |
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|
| T |
14880203 |
agcaaaaacacttgtattttattatccatttgcaggtagattaagggaaggtcctggtaggaaacttatggtggattgcactggagaaggtgttttgttt |
14880104 |
T |
|
| Q |
101 |
attgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||| || | |||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |
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|
| T |
14880103 |
attgaagctgatgcagatgttactcttaaagagtttggtgatgctcttcatcctccatttccttgcttggatgagcttctttattatgttcctggttctt |
14880004 |
T |
|
| Q |
201 |
cagttgtgcttaacactccattg |
223 |
Q |
| |
|
||| |||| |||||||||||||| |
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|
| T |
14880003 |
cagatgtgattaacactccattg |
14879981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14757160 - 14757382
Alignment:
| Q |
1 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | || |||||| |||||||| |
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|
| T |
14757160 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtccgggtaggaaacttatggtggattgcactggagaaggtgttttgttt |
14757259 |
T |
|
| Q |
101 |
attgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
200 |
Q |
| |
|
|||||||||||||| ||||||| | | || |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14757260 |
attgaagctgatgcagatgttagtttgaaagaatttggtgaagatcttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
14757359 |
T |
|
| Q |
201 |
cagttgtgcttaacactccattg |
223 |
Q |
| |
|
||| | ||||||||||||||||| |
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|
| T |
14757360 |
cagatatgcttaacactccattg |
14757382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14769711 - 14769488
Alignment:
| Q |
1 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | || |||||| |||||||| |
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|
| T |
14769711 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctggtaggaaacttatggtggattgcactggagaaggtgttttgttt |
14769612 |
T |
|
| Q |
101 |
attgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
200 |
Q |
| |
|
|||||||||||||| ||||||| | | || |||||||||||||| |||| ||||| |||||||| | ||||||||||||| ||||||||||||||||| |
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|
| T |
14769611 |
attgaagctgatgcagatgttagtttgaaagaatttggtgatgctcttcaacctccttttccttgtttggatgagcttctttttgatgttcctggttctt |
14769512 |
T |
|
| Q |
201 |
cagttgtgcttaacactccattgt |
224 |
Q |
| |
|
||| ||||||||| |||||||| |
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|
| T |
14769511 |
cagaagtgcttaactgtccattgt |
14769488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14874917 - 14874695
Alignment:
| Q |
1 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| | || |||||| |||||||| |
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|
| T |
14874917 |
agcaaaaacacttgtgttttattatccatttgcaggtaggttaagggaaggtcctggtaggaaacttatggtggattgcactggagaaggtgttttgttt |
14874818 |
T |
|
| Q |
101 |
attgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttctt |
200 |
Q |
| |
|
|||||||||||||| |||||||| || || | || |||||| || ||||||||||||||| ||| | ||||| |||||||||||||||| |||||||| |
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|
| T |
14874817 |
attgaagctgatgcagatgttaccattaaagatttgggtgatactcttcatcctccatttcgttgtttggatgaacttctttatgatgttcttggttctt |
14874718 |
T |
|
| Q |
201 |
cagttgtgcttaacactccattg |
223 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
14874717 |
cagatgtgcttaacactccattg |
14874695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 36307158 - 36307234
Alignment:
| Q |
62 |
aaacttatggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttgg |
138 |
Q |
| |
|
||||| ||||| |||||||||| |||||| || |||| ||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
36307158 |
aaactcatggtggattgtaatggagaaggtgttatgttcattgaggcagatgctgatgtaacacttgaacaatttgg |
36307234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 91869 - 91651
Alignment:
| Q |
5 |
aaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgtttattg |
104 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||||||||| | |||||||||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
91869 |
aaaacgcttgtgttttattatccattggcaggtaggttgagggaaggtcccggcaggaaacttatggttgattgtactggagaaggtgttttgtttattg |
91770 |
T |
|
| Q |
105 |
aagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatgatgttcctggttcttcagt |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| | | ||||||| | |||||||||||||||||||||| |
|
|
| T |
91769 |
aagctgatgctgatgttactcttaaacaatttggtgatgcacttcatcctccatttccatgcttgggtgagcttatctatgatgttcctggttcttcaga |
91670 |
T |
|
| Q |
205 |
tgtgcttaacactccattg |
223 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
91669 |
tgttcttaacactccattg |
91651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 14857514 - 14857695
Alignment:
| Q |
1 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14857514 |
agcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctggtaggaagcttatggtagattgtaatgatgaaggtattttgttt |
14857613 |
T |
|
| Q |
101 |
attgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttcttt |
182 |
Q |
| |
|
|||||||||||||||||||||| | | || |||||||||||||| |||| ||||| |||||||| | ||||||||||||| |
|
|
| T |
14857614 |
attgaagctgatgctgatgttagtttgaaagaatttggtgatgctcttcaacctccttttccttgtttggatgagcttcttt |
14857695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 47240829 - 47240927
Alignment:
| Q |
68 |
atggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc |
166 |
Q |
| |
|
||||| ||||||| || ||||||| | |||| ||||||||||| |||||||| || ||||| ||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
47240829 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgc |
47240927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 47296364 - 47296266
Alignment:
| Q |
68 |
atggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc |
166 |
Q |
| |
|
||||| ||||||| || ||||||| | |||| ||||||||||| |||||||| || ||||| |||||||||||||| | ||||||||||| |||||| |
|
|
| T |
47296364 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgc |
47296266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 47255809 - 47255879
Alignment:
| Q |
96 |
tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc |
166 |
Q |
| |
|
|||| ||||||||||| |||||| | || ||||| ||||||||||||||| | || ||||||||||||||| |
|
|
| T |
47255809 |
tgttcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgc |
47255879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 47300928 - 47300858
Alignment:
| Q |
96 |
tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc |
166 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||| |||||||||||||| | ||||||||||| |||||| |
|
|
| T |
47300928 |
tgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgc |
47300858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 47282162 - 47282232
Alignment:
| Q |
96 |
tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc |
166 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||| | |||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
47282162 |
tgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgc |
47282232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 32729522 - 32729592
Alignment:
| Q |
96 |
tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc |
166 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||| ||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
32729522 |
tgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgc |
32729592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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