View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_high_4 (Length: 446)
Name: NF11755_high_4
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 42256179 - 42255755
Alignment:
| Q |
6 |
aagaacaaaaggaagtggaaagaattcaataataaatcctnnnnnnnttaaaatacctagctgattaaattaactcnnnnnnnnnnnnnnngagggtaaa |
105 |
Q |
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| T |
42256179 |
aagaacaaaaggaagtggaaagaattcaataataaatcctaaaaaaattaaaatacctagctgattaaattaactccaaaaaaaaaaa---gagggtaaa |
42256083 |
T |
|
| Q |
106 |
ataaattgttacactgatgaactatcaacaagaacctcattcaatacatcatcatcaccatttgccaaggtgaatagttctgcatccttatcttcatcac |
205 |
Q |
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| T |
42256082 |
aaaaattgttacactgatgaactatcaacaagaacctcattcaacacatcatcatcaccatttgccaaggtgaacagttctgcatccttatcttcatcac |
42255983 |
T |
|
| Q |
206 |
ttgataaatcccttctttccaatttagaatgagctgcaacaaaaatcaacttctgaaccttatccaatgaagtcttgtagtgaccatgagaacaaaccca |
305 |
Q |
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| T |
42255982 |
ttgataaatcccttctttccaatttagaatgagctgcaacaaaaatcaacttctgaaccttatccaatgaagtcttgtagtgaccatgagaacaaaccca |
42255883 |
T |
|
| Q |
306 |
tttccacatagaccaactacatttgaatccacaagaagttgcatgaaggaaaattaacctcacagcaactcttcctaaggatttgaattcagttaaataa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42255882 |
tttccacatagaccaactacatttgaatccacaagaagttgcatgaaggaaaattaacctcacagcaactcttcctaaggatttgaattcagttaaataa |
42255783 |
T |
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| Q |
406 |
gtttcccaaacaagtctactactttgtg |
433 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42255782 |
gtttcccaaacaagtctactactttgtg |
42255755 |
T |
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