View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_high_5 (Length: 440)
Name: NF11755_high_5
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 28835846 - 28835721
Alignment:
| Q |
17 |
gtttccaatataagatataatgatagctcaacacacatatctttttcaccaaaaaccaacccttaagtttatgatgatggcatgcacagttaaaaatatt |
116 |
Q |
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| T |
28835846 |
gtttccaatataagatataatgatagctcaacacacatatctttttcagcaaaaaccaacccttaagtttatgatgatggcatgcacagttaaaaatatt |
28835747 |
T |
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| Q |
117 |
tagttaaaatcatttaattgttttct |
142 |
Q |
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| T |
28835746 |
tagttaaaatcatttaattgttttct |
28835721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 28835694 - 28835588
Alignment:
| Q |
171 |
ttgttatcattaat-attttacaactgttttaggttaaatttaaatttcgtgtatttagattagagtattataagatcatgactctacgtaaagctgaca |
269 |
Q |
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| T |
28835694 |
ttgttatcattaatcattttacaactgttttaggttaaatttaaatttcgtgtatttagattagagtattataagatcatgactctacgtaaagctgaca |
28835595 |
T |
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| Q |
270 |
tgtaatg |
276 |
Q |
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||||||| |
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| T |
28835594 |
tgtaatg |
28835588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 28835510 - 28835451
Alignment:
| Q |
354 |
tgttctttgagttccacactgtcatgcagaagatcctccttcgttaattatcaacctttg |
413 |
Q |
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| T |
28835510 |
tgttctttgagttccacactgtcatgcagaagatcctccttcgttaattatcaacctttg |
28835451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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