View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_high_6 (Length: 434)

Name: NF11755_high_6
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_high_6
NF11755_high_6
[»] chr8 (2 HSPs)
chr8 (107-419)||(4954073-4954388)
chr8 (33-85)||(4953997-4954049)
[»] chr7 (2 HSPs)
chr7 (165-413)||(10479041-10479299)
chr7 (17-83)||(22660770-22660837)
[»] scaffold0590 (3 HSPs)
scaffold0590 (259-416)||(4702-4859)
scaffold0590 (107-263)||(7798-7952)
scaffold0590 (383-416)||(4667-4700)
[»] chr4 (3 HSPs)
chr4 (16-70)||(4045066-4045120)
chr4 (16-78)||(23376218-23376281)
chr4 (23-84)||(37997851-37997913)
[»] chr2 (2 HSPs)
chr2 (16-59)||(11727387-11727430)
chr2 (16-59)||(45523719-45523762)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 107 - 419
Target Start/End: Original strand, 4954073 - 4954388
Alignment:
Q  107 taaagaaaatactgattttaaaacctttaatcttggccattaagaatttcaagtgccatgcttttcctttctatctca---cttttgaattttaatgctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  4954073 taaagaaaatactgattttaaaacctttaatcttggccattaagaatttcaagtgccatgcttttcctttctatctcatcacttttgaattttaatgctt 4954172  T
Q  204 tacgttaagctatctctaaattcattggatgagaactgaatagcactatgtgcatgaggccagtaacacttattagaacaagtttatggtattacacttg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4954173 tacgttaagctatctctaaattcattggatgagaactgaatagcactatgtgcctgaggccagtaacacttattagaacaagtttatggtattacacttg 4954272  T
Q  304 tctcaaacacaccgtaataaccatcacaattcataagggtcttcatcgctcaacaaagtgattatgttcacaacatattaggagctgccaaatttgtttt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4954273 tctcaaacacaccgtaataaccatcacaattcataagggtcttcatcgctcaacaaagtgattatgttcacaacatattaggagctgccaaatttgtttt 4954372  T
Q  404 cttctctaaaataagt 419  Q
    ||||||||||||||||    
T  4954373 cttctctaaaataagt 4954388  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 4953997 - 4954049
Alignment:
Q  33 tgaatacgtgaggtgtttggggttcgacccctgatcctacatataacaatgac 85  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  4953997 tgaatacgtgaggtgtttgaggttcgacccctgatcctgcatataacaatgac 4954049  T

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Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 165 - 413
Target Start/End: Complemental strand, 10479299 - 10479041
Alignment:
Q  165 tgcttttcctttctatctcacttttgaattttaatgctttacgttaagctatctctaaattcattggatgagaactgaatagcactatgtgcatgaggcc 264  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||    
T  10479299 tgcttttcctttctatctcacttttcaattttaatgctttacgctaagctatctccaaattcattggatgagaactaaatagcactatgtacatgaggcc 10479200  T
Q  265 agtaacacttattagaacaagtttatggtattacacttgtctcaaacacaccgtaataaccatcacaattcataagggtcttcatc----------gctc 354  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||| | |||           |||    
T  10479199 agtagcacttattagaacaagtttatggtattacacttgtctcaaaaacactctaataaccatcacaattcacaagggtccttatccttcaggtttactc 10479100  T
Q  355 aacaaagtgattatgttcacaacatattaggagctgccaaatttgttttcttctctaaa 413  Q
    ||||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||    
T  10479099 aacaaagtatttctgttcacaacatattaggagctgccaaatctgttttcttctctaaa 10479041  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 22660837 - 22660770
Alignment:
Q  17 aattcactttttaaggtgaatacgtgaggtgtttggggttcg-acccctgatcctacatataacaatg 83  Q
    |||||||||| |||||| |||| ||| ||||||||||||||| ||||| |  ||||||||||||||||    
T  22660837 aattcactttataaggtaaataagtggggtgtttggggttcgaaccccggcccctacatataacaatg 22660770  T

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Target: scaffold0590 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 259 - 416
Target Start/End: Complemental strand, 4859 - 4702
Alignment:
Q  259 gaggccagtaacacttattagaacaagtttatggtattacacttgtctcaaacacaccgtaataaccatcacaattcataagggtcttcatcgctcaaca 358  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4859 gaggccagtaaaacttattagaacaagtttatggtattacacttgtctcaaacacacagtaataaccatcacaattcataagggtcttcatcgctcaaca 4760  T
Q  359 aagtgattatgttcacaacatattaggagctgccaaatttgttttcttctctaaaata 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4759 aagtgattatgttcacaacatattaggagctgccaaatttgttttcttctctaaaata 4702  T

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Target: scaffold0590; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 263
Target Start/End: Complemental strand, 7952 - 7798
Alignment:
Q  107 taaagaaaatactgattttaaaacctttaatcttggccattaagaatttcaagtgccatgcttttcctttctatctcacttttgaattttaatgctttac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7952 taaagaaaatactgattttaaaacctttaatcttggccattaa--atttgaagtgccatgcttttcctttctatctcacttttgaattctaatgctttac 7855  T
Q  207 gttaagctatctctaaattcattggatgagaactgaatagcactatgtgcatgaggc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7854 gttaagctatctctaaattcattggatgagaactgaatagcactatgtgcacgaggc 7798  T

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Target: scaffold0590; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 4700 - 4667
Alignment:
Q  383 aggagctgccaaatttgttttcttctctaaaata 416  Q
    ||||||||||||||||||||||||||||||||||    
T  4700 aggagctgccaaatttgttttcttctctaaaata 4667  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 4045066 - 4045120
Alignment:
Q  16 gaattcactttttaaggtgaatacgtgaggtgtttggggttcgacccctgatcct 70  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||    
T  4045066 gaattcactttttaaagtgaataagtggggtgtttggggttcgaaccctgatcct 4045120  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 23376281 - 23376218
Alignment:
Q  16 gaattcactttttaaggtgaatacgtgaggtgt-ttggggttcgacccctgatcctacatataa 78  Q
    ||||||||||| ||||||||||| ||| ||||| | ||||||||| ||| ||||||||||||||    
T  23376281 gaattcactttgtaaggtgaataagtggggtgtctgggggttcgaaccccgatcctacatataa 23376218  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 37997851 - 37997913
Alignment:
Q  23 ctttttaaggtgaatacgtgaggtgtttggggttcg-acccctgatcctacatataacaatga 84  Q
    |||||||||||||||| ||| ||||| ||||||||| ||||| || ||| |||||||||||||    
T  37997851 ctttttaaggtgaataagtggggtgtctggggttcgaaccccagaccctgcatataacaatga 37997913  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11727430 - 11727387
Alignment:
Q  16 gaattcactttttaaggtgaatacgtgaggtgtttggggttcga 59  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||    
T  11727430 gaattcactttataaggtgaataagtggggtgtttggggttcga 11727387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 45523762 - 45523719
Alignment:
Q  16 gaattcactttttaaggtgaatacgtgaggtgtttggggttcga 59  Q
    |||||||| || ||||||||||| ||||||||||||||||||||    
T  45523762 gaattcaccttataaggtgaataggtgaggtgtttggggttcga 45523719  T

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